Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi114g00013 ATGGGGCGTGGGAATAGCAAAAAGAGGGCGGGAATAGCAAAGGTCTTGACATTGAGAAGGCAGAGCACAGAGCTCATTTTAGGCCCAAGAGTCACACCTAGTGAGAGTTCGTCGCGGCGGTTGCAAGAAGAAGATTCCAAGATGAAGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTAGAGATCGACGACGATCAGAAACTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTCAGTGGTGATGCACTTGGTGAGGAATTTAAAGGCTATGTCTTCAAAATCACTGGAGGTTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGCTGACCCCTGGCCGTGTGCGCCTCTTGCTTCACAGGGGAACTCCTTGTTTTCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTAAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTACCAGGCCTGACTGACATTGAGAAGCCAAGGATGAGAGGTCCAAAGAGAGCATCCAAAATCCGTAAGCTGTTCAACTTGTCAAAGGAGGATGATGTGAGGAAAGGCGTACAGCAGAGACAGAGCAGAGACGCACATGTAAGTAGAGGCAGCCCTAAACAAGTAACGAAGAGGGATGGAGAGGGAGATCGAAACAGAGGGAGAGTCCGAGATGTGATGTTCGACTTCAATAGCAGATGGCAGAAATGGCTGCACATTAGGTCATTTGCGTTTGCAGAAACGGGGAAAAAGGTAAGCAAAGCTCCGAAAATACAACGACTTGTCACTCCTCTTACACTCCAAAGAAAGCGGGCAAGGATTGCTGATAAGAAGAAGAGAATCGCTAAGGCAAAATCAGAAGCAGCTGAGTACCAGAAGCTCCTTGCCTCCAGGTTGAAGGAGCAGAGGGAGCGTCGTAGTGAGAGTTTGGCTAAGAGGAGATCCAAGATCTCTAGTGTTACTAAGGCAGCTGCCACTCTATAA 1029 0.4859 MGRGNSKKRAGIAKVLTLRRQSTELILGPRVTPSESSSRRLQEEDSKMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKGVQQRQSRDAHVSRGSPKQVTKRDGEGDRNRGRVRDVMFDFNSRWQKWLHIRSFAFAETGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSVTKAAATL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi114g00013 342 ProSitePatterns Ribosomal protein S6e signature. 99 110 IPR018282 GO:0003735|GO:0005840|GO:0006412
Sebi114g00013 342 PANTHER 40S RIBOSOMAL PROTEIN S6 256 332 IPR001377 GO:0003735|GO:0005840|GO:0006412
Sebi114g00013 342 MobiDBLite consensus disorder prediction 317 342 - -
Sebi114g00013 342 Pfam Ribosomal protein S6e 48 175 IPR001377 GO:0003735|GO:0005840|GO:0006412
Sebi114g00013 342 Gene3D - 249 334 - -
Sebi114g00013 342 MobiDBLite consensus disorder prediction 201 235 - -
Sebi114g00013 342 Hamap 30S ribosomal protein S6e [rps6e]. 6 164 IPR020924 GO:0003735|GO:0005840|GO:0006412
Sebi114g00013 342 Gene3D - 180 228 - -
Sebi114g00013 342 Coils Coil 282 309 - -
Sebi114g00013 342 SMART Ribosomal_S6e_2 48 175 IPR001377 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi114g00013 Sebi-Chr114 363711 367848 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi114g00013 110 335 Cytoplasmic Ribosomal Protein Gene Family AT4G31700 68.142 1.63e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi114g00013 K02991 - gmx:100801194 389.423