Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1146g00004 ATGATGCAGATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCCAAGATTCAAGATAAGGAAGGGATCCCTCCAGACCAACAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTTCATTTGGTGCTCCGTCTCCGTGGTGGGATGCAAATCTTTGTGAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACCATTGATAATGTCAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCAGAACATTAGCTGATTACAACATCCAGAAAGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTATGCAAATATTCGTCAAAACCCTCACTGGAAAGACCATCACTCTTGAAGTTGAGAGTTCTGACACCATAGACAATGTGAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAACAGAGGCTTATCTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAACATCCAAAAAGAGTCAACTCTCCACCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAAACCCTTACTGGCAAGACAATTACTTTAGAGGTAGAGAGCTCAGACACCATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACATTGGCAGACTACAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGAATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACTATCACCTTAGAGGTTGAGAGTTCAGACACCATCGATAATGTCAAAGCAAAAATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGTCCACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGATTTTAA 1155 0.4684 MMQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1146g00004 384 CDD Ubl_ubiquitin 156 231 - -
Sebi1146g00004 384 Pfam Ubiquitin family 310 381 IPR000626 GO:0005515
Sebi1146g00004 384 Pfam Ubiquitin family 158 229 IPR000626 GO:0005515
Sebi1146g00004 384 Pfam Ubiquitin family 82 153 IPR000626 GO:0005515
Sebi1146g00004 384 Pfam Ubiquitin family 234 305 IPR000626 GO:0005515
Sebi1146g00004 384 Pfam Ubiquitin family 6 77 IPR000626 GO:0005515
Sebi1146g00004 384 SUPERFAMILY Ubiquitin-like 79 155 IPR029071 -
Sebi1146g00004 384 SUPERFAMILY Ubiquitin-like 306 383 IPR029071 -
Sebi1146g00004 384 FunFam Polyubiquitin 3 232 307 - -
Sebi1146g00004 384 ProSitePatterns Ubiquitin domain signature. 106 131 IPR019954 -
Sebi1146g00004 384 PANTHER UBIQUITIN 156 233 - -
Sebi1146g00004 384 CDD Ubl_ubiquitin 4 79 - -
Sebi1146g00004 384 SUPERFAMILY Ubiquitin-like 4 79 IPR029071 -
Sebi1146g00004 384 Gene3D - 156 231 - -
Sebi1146g00004 384 Gene3D - 80 155 - -
Sebi1146g00004 384 Gene3D - 232 307 - -
Sebi1146g00004 384 Gene3D - 1 79 - -
Sebi1146g00004 384 Gene3D - 308 384 - -
Sebi1146g00004 384 SUPERFAMILY Ubiquitin-like 231 307 IPR029071 -
Sebi1146g00004 384 SUPERFAMILY Ubiquitin-like 155 231 IPR029071 -
Sebi1146g00004 384 FunFam Polyubiquitin 3 156 231 - -
Sebi1146g00004 384 CDD Ubl_ubiquitin 308 383 - -
Sebi1146g00004 384 ProSitePatterns Ubiquitin domain signature. 258 283 IPR019954 -
Sebi1146g00004 384 CDD Ubl_ubiquitin 232 307 - -
Sebi1146g00004 384 ProSitePatterns Ubiquitin domain signature. 30 55 IPR019954 -
Sebi1146g00004 384 FunFam Polyubiquitin 3 308 383 - -
Sebi1146g00004 384 PRINTS Ubiquitin signature 56 77 IPR019956 -
Sebi1146g00004 384 PRINTS Ubiquitin signature 14 34 IPR019956 -
Sebi1146g00004 384 PRINTS Ubiquitin signature 35 55 IPR019956 -
Sebi1146g00004 384 ProSiteProfiles Ubiquitin domain profile. 80 155 IPR000626 GO:0005515
Sebi1146g00004 384 FunFam Polyubiquitin 3 80 155 - -
Sebi1146g00004 384 ProSiteProfiles Ubiquitin domain profile. 4 79 IPR000626 GO:0005515
Sebi1146g00004 384 CDD Ubl_ubiquitin 80 155 - -
Sebi1146g00004 384 ProSiteProfiles Ubiquitin domain profile. 232 307 IPR000626 GO:0005515
Sebi1146g00004 384 ProSitePatterns Ubiquitin domain signature. 182 207 IPR019954 -
Sebi1146g00004 384 ProSiteProfiles Ubiquitin domain profile. 156 231 IPR000626 GO:0005515
Sebi1146g00004 384 SMART ubq_7 308 379 IPR000626 GO:0005515
Sebi1146g00004 384 SMART ubq_7 4 75 IPR000626 GO:0005515
Sebi1146g00004 384 SMART ubq_7 80 151 IPR000626 GO:0005515
Sebi1146g00004 384 SMART ubq_7 156 227 IPR000626 GO:0005515
Sebi1146g00004 384 SMART ubq_7 232 303 IPR000626 GO:0005515
Sebi1146g00004 384 ProSiteProfiles Ubiquitin domain profile. 308 383 IPR000626 GO:0005515
Sebi1146g00004 384 FunFam Polyubiquitin 3 4 79 - -
Sebi1146g00004 384 ProSitePatterns Ubiquitin domain signature. 334 359 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1146g00004 Sebi-Chr1146 72106 73260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1146g00004 4 80 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.15e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1146g00004 K08770 - psom:113311590 738.413