Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1141g00006 ATGGGTTGCATTTACTCCAGGGTTTGCATAGGTGACACTTGCAGGGGTTCCAGTGTCAATGGGGACCCAATTTTGAGACCAGGTGTGGGTGAAGTCGCTGCTACGTTCTCACCAACATCTTCAGAGGTTCGAGAAGGTGAAATCAGAGACAATTTGAACCAATTGAGCTTAACCAGAGAGTCTGAAGCTGGAATCAGAAGGCTCGCTAGGGTTTCTGCTCAGTTTCTTCCCCCAGATGGTTCCAGAGTTGTGAAGGTTCCTTCAAACAACTATGATTTGCGCTATTCGTTTTTGTCTCAGAGAGGTTACTACCCTGATGCACTTGATAAGGCTAACCAAGACAGCTTCTGCATTCACACTCCCTTTGGAACTAGTCCTAACGATCATTTCTTCGGGGTTTTTGATGGTCATGGTGAATTTGGAGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTGTGTGAGAATTTGCTGAGGAACTCCAAGTTTCGTGTGGATGCTGTGGAGGCTTGTCATGCTGCGTTCTTGACCACGAATTCGCAGTTGCATGCTGATATTTTGGATGATAGCATGAGTGGAACTACGGCCATCACAGTGCTGGTTCGGGGAAGAACTATGTATGTGGCGAATTGTGGTGATTCGAGGGCGGTGATAGCAGAGAAGAGAGGGAAGGATGTTGTGGCGGTTGATTTGTCAATTGATCAGACACCTTTTAGGACTGATGAGCTTGAAAGGGTGAAGCTTTGTGGAGCAAGGGTTCTTACCTTGGATCAGATTGAAGGGTTGAAGAACCCTGATGTTCAGTGTTGGGGTACTGAAGAAGGTGATGATGGTGACCCTCCTAGGTTGTGGGTGCCCAATGGGATGTACCCTGGTACTGCTTTTACCAGGAGTTTAGGTGATTCTGTTGCTGAGAGTATTGGGGTTGTTGCTAACCCTGAGATTGTTGTGTTCGAGCTCACAGAGGATAATCCCTTTTTTGTGCTTGCCAGTGATGGGGTGTTTGAGTTTCTTTCTAGCCAGACTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCTGCAATAGTGGCAGAATCTTATCGACTCTGGCTACAGTATGAAACTCGTACAGATGATATTACAGTCATAATTGTGCATATAAATGGGCTAACTGAACCTGCTGTTGGTCAGTCAGCAAGTTATGGTGATGTTTACGAGCCCCCGTACCTCAAGTTGGCACGCCTCCGAGCAATTGAAAATTCCCTAGAGAATGGACAAGCTTGGGTCCCTCCATCTTCAGCCCACAGGAAGACATGGGAGGAAGAAGCACACATCGAGCAGGCGTTGCATGATCATTTTCTCTTCCGAAAACTTACTGATTCACAATGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAAGTCGAACCTGGGGATATTATAGTCAAACAGGGTGGTGAAGGTGACTGTTTCTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACTCAGGAGGAAAAGGATGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCTGAAAAACTATCATGTTTTGGAGAACTTGCTTTAATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTATCATCCTTGAAGTTGCTTCGGTCTGTAGACCTCCTCTCAAGGCTGTCAATTTTGCAATTGAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCGTTCTCAAGTGGGCAGACAATAATTGAAAAAAATGAAGTCCATGCATTGTATATTATCCAGAAGGGACGAGTGAAAATCGCTTTTGATGCTGATTTATTGACAAGTGCAAATGCCTCCAGCCTCAGGCCTGACATCCAAAATGATGATGATGATGTACAGAGCAGAAGAGAACTGTCAATAGAGAAGCCGGAGGGAAGCTATTTTGGTGAATGGGCCCTTCTTGGCGAAAATATTGGTTCCTTAACTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACCAAGGACAATTTGAATCAGTTATTGGCTCCTTGCAAAAGATTTCTCAGGAAGATCACAAAAAATTTGCTTACATTGAAGAGATTTTCTAAGCCAATGGTGAAAAGGCTAGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATCAAGG 2227 0.4441 MGCIYSRVCIGDTCRGSSVNGDPILRPGVGEVAATFSPTSSEVREGEIRDNLNQLSLTRESEAGIRRLARVSAQFLPPDGSRVVKVPSNNYDLRYSFLSQRGYYPDALDKANQDSFCIHTPFGTSPNDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRNSKFRVDAVEACHAAFLTTNSQLHADILDDSMSGTTAITVLVRGRTMYVANCGDSRAVIAEKRGKDVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSLGDSVAESIGVVANPEIVVFELTEDNPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLTEPAVGQSASYGDVYEPPYLKLARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQGGEGDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSSGQTIIEKNEVHALYIIQKGRVKIAFDADLLTSANASSLRPDIQNDDDDVQSRRELSIEKPEGSYFGEWALLGENIGSLTAVAVGDVVCALLTKDNLNQLLAPCKRFLRKITKNLLTLKRFSKPMVKRLGKESQVLKEKDLIK 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1141g00006 742 PRINTS cAMP-dependent protein kinase signature 696 708 - -
Sebi1141g00006 742 PRINTS cAMP-dependent protein kinase signature 472 486 - -
Sebi1141g00006 742 PRINTS cAMP-dependent protein kinase signature 487 501 - -
Sebi1141g00006 742 PRINTS cAMP-dependent protein kinase signature 522 531 - -
Sebi1141g00006 742 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Sebi1141g00006 742 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 434 700 - -
Sebi1141g00006 742 SUPERFAMILY cAMP-binding domain-like 432 561 IPR018490 -
Sebi1141g00006 742 SMART PP2C_4 86 382 IPR001932 -
Sebi1141g00006 742 CDD PP2Cc 110 384 IPR001932 -
Sebi1141g00006 742 Pfam Protein phosphatase 2C 124 363 IPR001932 -
Sebi1141g00006 742 CDD CAP_ED 577 710 IPR000595 -
Sebi1141g00006 742 CDD CAP_ED 451 560 IPR000595 -
Sebi1141g00006 742 Gene3D Jelly Rolls 417 559 IPR014710 -
Sebi1141g00006 742 Gene3D - 83 385 IPR036457 -
Sebi1141g00006 742 Pfam Cyclic nucleotide-binding domain 596 700 IPR000595 -
Sebi1141g00006 742 Pfam Cyclic nucleotide-binding domain 470 561 IPR000595 -
Sebi1141g00006 742 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Sebi1141g00006 742 ProSiteProfiles cAMP/cGMP binding motif profile. 451 560 IPR000595 -
Sebi1141g00006 742 Gene3D Jelly Rolls 567 716 IPR014710 -
Sebi1141g00006 742 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 425 565 - -
Sebi1141g00006 742 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Sebi1141g00006 742 SMART cnmp_10 577 715 IPR000595 -
Sebi1141g00006 742 SMART cnmp_10 451 574 IPR000595 -
Sebi1141g00006 742 SUPERFAMILY cAMP-binding domain-like 570 716 IPR018490 -
Sebi1141g00006 742 SUPERFAMILY PP2C-like 82 386 IPR036457 -
Sebi1141g00006 742 ProSiteProfiles cAMP/cGMP binding motif profile. 577 717 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1141g00006 Sebi-Chr1141 91987 98040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1141g00006 1 742 PP2C-type Phosphatase Gene Family AT2G20050 66.029 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1141g00006 - - gmx:100799821 1246.49