Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi113g00048 ATGTCTCGGCCTCTGCTCGGGATAGGGGATGAGGAAGGAGAAAGCAATGTCACTTTGTTGGTTTCTTCCTCAGCCACTGTGGAAAGTGTGTGCTTGAATGGTTCAAAACTGAAAGAGCGCAATTACATGGGGTTATCATCAGATTGTTCATCAGTGGACAGTTCAGTTCCACTTCCATCCTTCTCAGATGAGAGCAAAAGCAATCTGAACCTCAAAGCCACAGAACTCAGATTGGGGCTTCCAGGATCACAGTCTCCTGTAAGAGATTCAGATCTTTGCTTGAGAAGTTCAACTCAGTTTGATGAGAAGCCTTTGTTTCCTTTGCATCCAGTAACAGATGATCATCATTCCTCATCAAAGCCTGCTGTTTTGGGCAACAAAAGAGGGTTCTCAGATGCCATGAATGGATTCTCAGAGGGGAAATTGATGCTTGAGAATGTTGGGGCTCAACAAGCCAAAGCCAAAGAAATAGCAGCAACAGCCAAGGTTGGTCTTGAGGGTCCACATGATGCCAATGAAAGCAGACCAAGTCTTAATGGTTCTGCAAATAATAGTAATAATACTGCACCAGCTACAAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAATTCATTGACTACTGCTTCAAAGAATGTTGAAGAAGTGGATGGAAAAATGGGGTCTGGTGCACTGTTTGTGAAGGTCAGTATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACTCTGCATATGCAGAATTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTCACCATAGGTCAATGTGGATCTCATGGAAATCTGGGCAAGGAGATGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTTACATATGAGGATAAAGATGGTGACTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTTATTGATACATGCAGAAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGACCTGTCTATGGAGGGTTCTTATATTCTCTGTGGTCAAGTTCCTGCTGTGGTGAAGGATTTGTAG 1074 0.4358 MSRPLLGIGDEEGESNVTLLVSSSATVESVCLNGSKLKERNYMGLSSDCSSVDSSVPLPSFSDESKSNLNLKATELRLGLPGSQSPVRDSDLCLRSSTQFDEKPLFPLHPVTDDHHSSSKPAVLGNKRGFSDAMNGFSEGKLMLENVGAQQAKAKEIAATAKVGLEGPHDANESRPSLNGSANNSNNTAPATKAQVVGWPPIRSFRKNSLTTASKNVEEVDGKMGSGALFVKVSMDGAPYLRKVDLKNYSAYAELSSALEKMFSCFTIGQCGSHGNLGKEMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLDLSMEGSYILCGQVPAVVKDL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi113g00048 357 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 335 IPR003311 GO:0005634|GO:0006355
Sebi113g00048 357 MobiDBLite consensus disorder prediction 174 193 - -
Sebi113g00048 357 Gene3D - 223 343 - -
Sebi113g00048 357 MobiDBLite consensus disorder prediction 166 197 - -
Sebi113g00048 357 FunFam Auxin-responsive protein 223 340 - -
Sebi113g00048 357 SUPERFAMILY CAD & PB1 domains 224 329 - -
Sebi113g00048 357 ProSiteProfiles PB1 domain profile. 228 330 IPR000270 GO:0005515
Sebi113g00048 357 Pfam AUX/IAA family 74 336 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi113g00048 Sebi-Chr113 1716549 1720143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi113g00048 242 338 B3 DNA Binding Superfamily AT1G19220 30.928 2.88e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi113g00048 AUX_IAA 1.3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi113g00048 K14484 - gmx:100815447 532.332