Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi113g00044 ATGGAGTTATATGATCATGATTTCTTGGAGGAATTGCTTGCTCTAAGAACAAAACCACATTTAGAAGAAAACCAACTCTTGAGTACTAATTATGGTTGGAGTTTTGATTGTTTTGATCAAAACTCTTCTCCTTTTCTTCCAAATGCTTCTTCTTCTTACCAAGAAGTTCCTCAAAATTACACTTTCAATGAAATCTACAGTTCATTACTTGATGAATTCTCTACACCCAAGATCATTGATTCATCATCCTATAACACCACCACTACCCTTGATACTCCACTTAACACACCTCCATTTCTGGCTCAAGAAGATTATCCATTGTCTGTGATGGAAGATGAGGATCCTGGTCTACTTGGGGATGAGCTTCATAGTTTGGACCTTCAAACCACATGCAAAATGGAGCCAAGCTTATCCCCTGAAGAAATGCCTGTTTTCAGCCAAGGTACATGTATGGAAAGAAAGAATAGAGCAAAGAAGCTTCAGGGTCAGCCTTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTAAATGATAGGCTCTCTATGCTAAGATCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATTCTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATTAATAATTTGAAACAAGAAATAGAAGTAGATTCAAGCATGGCTAGCATTTTCAAGGATGTGAAGCCCAATGAAATCTTAGTGAGAAATTCTCCCAAGTTTGATGTGGATAGGAAGAATGTGAACACAAGGGTTGAGATCTGCTGTGCAGGGAAGTCAGGGTTGTTGCTATCTACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATCCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAAGCTTCTTGTTCAGAGGAATTGGAACAGAAGACAATTCTGAGTTCTGAAGATATAAAGCAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTGA 996 0.3825 MELYDHDFLEELLALRTKPHLEENQLLSTNYGWSFDCFDQNSSPFLPNASSSYQEVPQNYTFNEIYSSLLDEFSTPKIIDSSSYNTTTTLDTPLNTPPFLAQEDYPLSVMEDEDPGLLGDELHSLDLQTTCKMEPSLSPEEMPVFSQGTCMERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSSMASIFKDVKPNEILVRNSPKFDVDRKNVNTRVEICCAGKSGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQKTILSSEDIKQALFRSAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi113g00044 331 Coils Coil 201 228 - -
Sebi113g00044 331 Pfam Helix-loop-helix DNA-binding domain 168 211 IPR011598 GO:0046983
Sebi113g00044 331 SMART finulus 168 217 IPR011598 GO:0046983
Sebi113g00044 331 Gene3D - 170 244 IPR036638 GO:0046983
Sebi113g00044 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 68 326 - -
Sebi113g00044 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Sebi113g00044 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 224 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi113g00044 Sebi-Chr113 1526356 1527857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi113g00044 92 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 54.762 5.84e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi113g00044 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi113g00044 - - gmx:100814388 514.227