Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi113g00035 ATGGTGTTGAGGAAAGTAGGCAAGTATGAGATTGGGAGAACCATTGGAGAGGGAACCTTCGCGAAGGTCAAATTCGCTCAGAACACAGAAACTGGCGAGAGCGTCGCCATGAAGGTGCTCGATCGCAGCACCATCATCAAGCACAAAATGATCGACCAGATCAAGAGGGAGATTTCTATTATGAAGCTAGTCAGACATCCACATGTTGTTCGTCTGTATGAGGTTCTAGCAAGCCGTACTAAGATTTACATCGTACTGGAGTACATTACAGGCGGTGAATTGTTTGATAAAATTGTACACCACGGGCGTCTCAGTGAAGCTGAATCTAGAAGATACTTCCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAACCTTTTACTTGATTCACAAGGAAATATAAAGATTTCAGATTTTGGTTTGAGTGCATTGCCAGAACAGGGGGTTAGTATGCTTCGGACAACTTGTGGGACTCCTAATTATGTAGCCCCTGAGGTACTCAGTCACAAAGGTTATAATGGTGCTCTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTACTAATGGCTGGATATCTCCCCTTTGATGAGCTTGATCTAACTACGTTATACATGACAGAGAATAATGTCTTGTATGATATTGAGAAAGCAGAGTTTTCATGCCCTCCTTGGTTTCCTGTGGGAGCAAAATCTTTGATACACAGAATTTTGGACCCAAATCCTGAACGTCGTATAACCATTCAGCAGATTAGAAATGATGAGTGGTTTCAAAAAGACTATGTTCCTGTCCATCTCCTCGAGTATGAAGATGTAAATCTGGATGATGTAAATGCTGCATTTGACAATGCTGAGGATCAGAGGGCTAATCAGCAATGTGAGAATGAGGACATGGGTCCTCTAATTCTTAATGCATTCGACATGATAATTTTATCCCAAGGCTTAAACCTTTCAACACTCTTTGAACGTGGACAGGACTCTATGAAGTACCAAACACGCTTCCTCACTCAAAAGCCAGCAAAGATGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACACATATTCGCAACTATAAGATGAGAATAGAGGGTATTTCAGCAGATAAGACTTCTTATTTCTCAGTTATACTGGAAGTTTTTGAAGTTGCTCCTACATTTTTCATGGTGGACATTCAGAAAGCAGCTGGAGATGGAGGTGAATATCTCAAGTTTTACAATAATTTTTCTAGCAATCTTGAAGATATCATCTGGAAACCGCCTGATGAAACTAGCAAATTAAGGATCTCCATGACTAAAAGCAAAAGGCAGTAG 1362 0.4075 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMIDQIKREISIMKLVRHPHVVRLYEVLASRTKIYIVLEYITGGELFDKIVHHGRLSEAESRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNIKISDFGLSALPEQGVSMLRTTCGTPNYVAPEVLSHKGYNGALADVWSCGVILYVLMAGYLPFDELDLTTLYMTENNVLYDIEKAEFSCPPWFPVGAKSLIHRILDPNPERRITIQQIRNDEWFQKDYVPVHLLEYEDVNLDDVNAAFDNAEDQRANQQCENEDMGPLILNAFDMIILSQGLNLSTLFERGQDSMKYQTRFLTQKPAKMVLSSMEVVAQSMGFKTHIRNYKMRIEGISADKTSYFSVILEVFEVAPTFFMVDIQKAAGDGGEYLKFYNNFSSNLEDIIWKPPDETSKLRISMTKSKRQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi113g00035 453 FunFam Non-specific serine/threonine protein kinase 309 435 - -
Sebi113g00035 453 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 416 - -
Sebi113g00035 453 SUPERFAMILY Protein kinase-like (PK-like) 6 283 IPR011009 -
Sebi113g00035 453 CDD CIPK_C 316 431 - -
Sebi113g00035 453 ProSiteProfiles Protein kinase domain profile. 9 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi113g00035 453 Gene3D Kinase associated domain 1, KA1 309 435 - -
Sebi113g00035 453 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Sebi113g00035 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Sebi113g00035 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Sebi113g00035 453 Pfam Protein kinase domain 9 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi113g00035 453 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Sebi113g00035 453 Gene3D Phosphorylase Kinase; domain 1 2 88 - -
Sebi113g00035 453 Coils Coil 286 306 - -
Sebi113g00035 453 Pfam NAF domain 312 370 IPR004041 GO:0007165
Sebi113g00035 453 Gene3D Transferase(Phosphotransferase) domain 1 89 277 - -
Sebi113g00035 453 SMART serkin_6 9 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi113g00035 453 FunFam Non-specific serine/threonine protein kinase 2 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi113g00035 Sebi-Chr113 1240299 1246384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi113g00035 1 395 CBL-interacting serine-threonine protein kinases AT4G24400 80.759 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi113g00035 Pkinase 2.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi113g00035 - - gmx:100785444 804.668