Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi113g00025 ATGTCCTCACAAGCAGTGCAGTTGCGCATCTCAGACAGTCATGTGGTTATGGACAATGGCATACTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTCACTAGAATACAATATAATGGCATTGATAATTTGCTTGAAGCTCTTAATGAGAAGAATAATAGAGGGTACTGGGATGTTGTTTGGAGTGAAGCAGGAAGTACAGGAACAACCGGGACATTTGAGCGGATTTTGGGAACAAGTTTTAAAGTTATAATACAAAATGAGGAACAGGTTGAAATCTCATTTACAAGAATGTGGGATCCATCTCTAAAGGGAAAACAATCACCTCTAAATATTGACAAGAGGTATGTGATGCTTCGAAATTCCTCAGGCTTCTACTCTTATGCCATCTTTGAACACCTAAAGGAATGGCCTCCTTTTAACATATCTCAAACCAGGATTGTTTATAAGCTTCGGAAAGACAAGTTTCATTACATGGCTGTGGCAGATGATAGACAAAGATTCATGCCTCTCCCTGACGATAGATTACCAGGAAGAGGAGTAGAACTAGTTCCCCCAGAAGCAGTTTTGCTCGTCCATCCCGTGGAGCCAGAGTTCACGGGAGAGGTGGATGACAAGTATCAATATTCATGTAACAACGAAGATCTTGAGGTTCATGGATGGATAAGTTCAGAATCCAAAACTGATCCACCTATGGGATTCTGGGTAATCATACCCAGCAATGAGTTCAGATCAGGTGGCCTTGTTAAACAGAACCTTACTTCTCATGTAGGCCCCATCAGCCTCGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTCCTTAAACTCCAGCCAAATGAGCCATGGAAGAAAGTTTTTGGACCAACTTTTGTATATCTTAACACTTTGTTGGATGGTGAAGACCCACTAGAGCTATGGGAGGATGCCAAAAATCAGATGAACAAGGAAGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAGGATTTTCAAAAGTCTAACCAACGGGGCAGTGTGTGTGGCACGTTACTAGTTCAAGACAGGTGCCTAAGTGATGAGTACATATTAGCAGAAGGTGCATACATAGGTCTGGCACCACCTGGAGACTCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAATGAGGAAGGCTATTTCTCAATCAATAATATACGTAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGTTGTCATCACCATAACCCCAGTCCATTTTGTTAGAACAGTGCAACATGCAGGTTGTGAAATAAACGTTGGTGACATTATTTATGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATAGGAATACCTGATCGCTCTGCTGCTGAGTTCTATGTTCCTGATCCTAATCCAAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTGATTTATACAGTTGGTGTCAGTGACTACAGAAAAGATTGGTTCTTTGCACAAGTCACAAGGAAGAAAAACGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTTGATGAGGTGGAGGCAAGTGGAATCTATAAATTGCGTTTGGCGCTTGCAAGTGCAAATGTCTCTGAGTTACAGGTAAGGGTGAATGATCCAAAACAAGATCCTGCACTGTTTACTTCAGGGGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTACTGGCTATTCAACATTGATGTGCCAGGTCTTCTGCTAGGGGAAGGGGCTAATACTATATTTCTAACACAGGCTATGGCTACTGGTCCCTTGGCCCTCTTCCAAGGGATAATGTATGACTATATTCGTTTAGAAGGCCCCAACCCTTTTCTTCCCATCAAAGCAAATAAATTAAATTAG 1956 0.4197 MSSQAVQLRISDSHVVMDNGILQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEAGSTGTTGTFERILGTSFKVIIQNEEQVEISFTRMWDPSLKGKQSPLNIDKRYVMLRNSSGFYSYAIFEHLKEWPPFNISQTRIVYKLRKDKFHYMAVADDRQRFMPLPDDRLPGRGVELVPPEAVLLVHPVEPEFTGEVDDKYQYSCNNEDLEVHGWISSESKTDPPMGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGEDPLELWEDAKNQMNKEVQSWPYDFPASEDFQKSNQRGSVCGTLLVQDRCLSDEYILAEGAYIGLAPPGDSGSWQRECKGYQFWTRANEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNVVITITPVHFVRTVQHAGCEINVGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFRQYGLWERYADLYPNEDLIYTVGVSDYRKDWFFAQVTRKKNDGSYQGTTWQIKFNLDEVEASGIYKLRLALASANVSELQVRVNDPKQDPALFTSGVIGKDNAIARHGIHGLYWLFNIDVPGLLLGEGANTIFLTQAMATGPLALFQGIMYDYIRLEGPNPFLPIKANKLN 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi113g00025 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 640 - -
Sebi113g00025 651 Gene3D - 5 278 IPR014718 GO:0030246
Sebi113g00025 651 SUPERFAMILY Starch-binding domain-like 381 425 IPR013784 GO:0030246
Sebi113g00025 651 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Sebi113g00025 651 SUPERFAMILY Galactose-binding domain-like 454 637 IPR008979 -
Sebi113g00025 651 CDD RGL4_C 459 637 - -
Sebi113g00025 651 CDD RGL4_N 8 298 - -
Sebi113g00025 651 CDD RGL4_M 338 447 IPR029413 -
Sebi113g00025 651 Gene3D - 455 637 - -
Sebi113g00025 651 Pfam Polysaccharide lyase family 4, domain II 361 427 IPR029413 -
Sebi113g00025 651 Gene3D - 335 428 - -
Sebi113g00025 651 FunFam Rhamnogalacturonate lyase B 335 434 - -
Sebi113g00025 651 Pfam Polysaccharide lyase family 4, domain III 457 636 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi113g00025 Sebi-Chr113 1063368 1069442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi113g00025 1 640 Polysaccharide Lyase AT1G09890 63.400 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi113g00025 K18195 - gmx:100815677 1152.5