Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi113g00013 ATGGAGCCTGCAATGTACGGACACTCCCAGCCCATGAACATGCCCGGACAGATCGGCTCCGGTGAAAGTGACGACGGCTCCGGCGCTGAGGCCGCCATCGACGGCCACCACCACCACCACATTCAATACGAAACGCACACTCTCGAAGATGGTAGCGGTGGAGTTGGCGGTGGCGGTGTCGTCGAGGATGTTACTTCAGATGCTCTATACGCTTCTGGCCATGGTGGTGGAGGCTCTGAATTGTCTATTCAACACTGCGACGACTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAACTTTATGTTTTCGATTCAGTTACGCCCGATAAGGTTCAAGCGGTGTTGCTACTGTTGGGTGGATGTGAACTACCTCAAGCGGGTACGCCATGTGTGGATACGGGGCCTCAACAAGATCACAGGGGTTCCTTGGATTATCCTGCAAGATGTAGTCAACCACAGCGAGCAGCCTCATTAAGTAGGTTCCGACAAAAGAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATAGTGTGCGTCAAGAAGTTGCACTCAGGATGCACCGTAATAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCTAACAGCTGTGGTACGGACCAAGAGTCAGGGCAGGATGACAGTCAGTCGGAAACCTCATGCACACATTGTGGCATAAGTTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCGAGGTCACTGTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCATGAACACTCTCTTGCACCAGCCGAGCGGGTTGAAGGTAATAATGATTCAGACTGTCAGACTGCCATTCCTGCACCTAACAATCTTGCTGCTTTCGCAGAAAATGATAACTCAGCTCTGGTAGCTGATCGTTGA 933 0.5048 MEPAMYGHSQPMNMPGQIGSGESDDGSGAEAAIDGHHHHHIQYETHTLEDGSGGVGGGGVVEDVTSDALYASGHGGGGSELSIQHCDDSSQLTLSFRGQLYVFDSVTPDKVQAVLLLLGGCELPQAGTPCVDTGPQQDHRGSLDYPARCSQPQRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSCGTDQESGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPAERVEGNNDSDCQTAIPAPNNLAAFAENDNSALVADR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi113g00013 310 ProSiteProfiles CCT domain profile. 154 196 IPR010402 GO:0005515
Sebi113g00013 310 SMART GATA_3 216 269 IPR000679 GO:0006355|GO:0043565
Sebi113g00013 310 Gene3D - 212 272 IPR013088 GO:0006355|GO:0008270
Sebi113g00013 310 ProSitePatterns GATA-type zinc finger domain. 222 249 IPR000679 GO:0006355|GO:0043565
Sebi113g00013 310 MobiDBLite consensus disorder prediction 1 32 - -
Sebi113g00013 310 Pfam GATA zinc finger 222 257 IPR000679 GO:0006355|GO:0043565
Sebi113g00013 310 Pfam tify domain 89 119 IPR010399 -
Sebi113g00013 310 ProSiteProfiles Tify domain profile. 85 120 IPR010399 -
Sebi113g00013 310 ProSiteProfiles GATA-type zinc finger domain profile. 216 276 IPR000679 GO:0006355|GO:0043565
Sebi113g00013 310 CDD ZnF_GATA 221 266 IPR000679 GO:0006355|GO:0043565
Sebi113g00013 310 MobiDBLite consensus disorder prediction 195 235 - -
Sebi113g00013 310 PANTHER GATA TRANSCRIPTION FACTOR 28 28 277 IPR045280 GO:0006355
Sebi113g00013 310 SMART tify_2 85 120 IPR010399 -
Sebi113g00013 310 MobiDBLite consensus disorder prediction 187 240 - -
Sebi113g00013 310 Pfam CCT motif 154 196 IPR010402 GO:0005515
Sebi113g00013 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi113g00013 Sebi-Chr113 719536 724321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi113g00013 59 309 Tify Gene Family AT4G24470 53.184 5.17e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi113g00013 CCT 4e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi113g00013 - - pvu:PHAVU_008G182900g 466.463