Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1137g00004 ATGCACTACATAAGTCGATTCACAGCGGGCTTTATCATTGGTTTTGTCAGAGTGTGGCAAATCAGTTTAGTGACACTTGCAATTGTACCCTTGATTGCCCTTTCCGGTGGTCTTTATGCATATGTGACGATTGGACTTATTACAAATGTTAAGAAAGCATATGTGACGGCGGGTGAAATCGCTGAAGAGGTGATAGGCAATGTTAGAATCGTACAAGCATTTGTAGGAGAAGAAAGAGCAGTGAGGTCATACAAAGCGGCTCTAATGGACACATATAGGAATGGTCGAAAAGCAGGTTTAGCAAAGGGCCTAGGACTAGGCACTTTGCAATGTGTCCTTTTTCTATCATGGGCTTTGCTTGCTTGGTTCACTAGCATTGTTGTTCACAAGAATATCACCAATGGTGGAGAGGCGTTCACTACCATGCTTAATGTGGTGATCTCTGGCTTGTCACTTGGGCAGGCAGCACCAGATATTTCTGCATTTATCCGAGCAAAGGCAGCAGCTTATCCTATTTTTGAGATGATTGAGAGGGACACAGTAAGCAAAATTAGCTCCATAAATGGTCAAAAATTAAGTCACTTGGAGGGTCACATCCAATTTATGGATGTCTGTTTTAGTTACCCATCTCGTCCTGATGTAGTAATCTTCAACAATCTTTGTCTTGACATTCCTTCTGGGAAAATTTTAGCCCTTGTTGGAGGAAGTGGTTCTGGAAAAAGCACAGTGATATCACTAATTGAGCGCTTCTATGAACCAATTTCTGGTCAAATACTATTAGGTGGGTACAATATCAAGGAACTGGATCTCAAATGGCTTAGACAACAAATTGGGCTAGTTAGTCAAGAACCTGCACTTTTTGCTACAAGCATCAAGGAGAACATTTTGTATGGAAAAGACGATGTCAGTATTGAAGAACTAAATCTTGCTTTGAACCTTTCTGGTGCTCAGTCCTTCATAAGCAATCTTCCCGATGGATTAGATACTCAGGTTGGTGAGAAAGGGATACAATTATCAGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCTATAGTTAAGAATCCATCAATACTTTTATTAGATGAAGCAACCAGTGCTCTAGATGCAGAGTCTGAGAAGAGTGTACAAGAGGCTCTTGATTGTGTCATTGGGAGTGTTGTAGAAATTGGAAACCATAAAGAGCTCATTTCCAACCCAAATAGTGTATATGCATCTCTTGTTCAAATCCAAGAGACTAACTCTTTTCAAGGCCACCCTTTTACGGATCCATGCTTGGGGCAATCATCAAG 1292 0.411 MHYISRFTAGFIIGFVRVWQISLVTLAIVPLIALSGGLYAYVTIGLITNVKKAYVTAGEIAEEVIGNVRIVQAFVGEERAVRSYKAALMDTYRNGRKAGLAKGLGLGTLQCVLFLSWALLAWFTSIVVHKNITNGGEAFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTVSKISSINGQKLSHLEGHIQFMDVCFSYPSRPDVVIFNNLCLDIPSGKILALVGGSGSGKSTVISLIERFYEPISGQILLGGYNIKELDLKWLRQQIGLVSQEPALFATSIKENILYGKDDVSIEELNLALNLSGAQSFISNLPDGLDTQVGEKGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDCVIGSVVEIGNHKELISNPNSVYASLVQIQETNSFQGHPFTDPCLGQSS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1137g00004 430 Pfam ABC transporter transmembrane region 2 148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1137g00004 430 Gene3D - 189 382 IPR027417 -
Sebi1137g00004 430 PANTHER ABC TRANSPORTER B FAMILY 2 383 IPR039421 -
Sebi1137g00004 430 SUPERFAMILY ABC transporter transmembrane region 5 177 IPR036640 GO:0005524|GO:0016020
Sebi1137g00004 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 411 IPR027417 -
Sebi1137g00004 430 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 429 IPR003439 GO:0005524
Sebi1137g00004 430 FunFam ABC transporter B family member 20 189 386 - -
Sebi1137g00004 430 CDD ABC_6TM_Pgp_ABCB1_D1_like 2 172 - -
Sebi1137g00004 430 Gene3D ABC transporter type 1, transmembrane domain 2 188 IPR036640 GO:0005524|GO:0016020
Sebi1137g00004 430 Pfam ABC transporter 218 366 IPR003439 GO:0005524
Sebi1137g00004 430 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Sebi1137g00004 430 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 164 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi1137g00004 430 SMART AAA_5 226 416 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1137g00004 Sebi-Chr1137 111513 114090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1137g00004 14 417 Calmodulin-binding Proteins AT2G36910 40.000 8.68e-88 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1137g00004 K05658 - gmx:100809752 686.411