Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1136g00008 ATGTTACCCCTCATGGAAGACCTCCGTGACCTCCAACAACCCATTCCTCAAAACGGCGTCGCTTGGTTGATCAAACTCAAGGACGCCCTTCTATCTGCCAAGGACTTGTTGAGATTATGCAGCCAAGGAAGCAAGATTCACCTCGCATTGGAGGGTGAGGCGGTTATGATAAAGTTCCAAAGTGTGTATGAAAAATTAAGCCAAGCGTTTGATGGTGTGCCTGGTGATGAATTGGGGATCTCGGATGAAGTCAGAGAACAGCTTGAGCTAATGCACGTGCAACTGAGGCGGGGGAAGAGAAGGACTGATACACAGGACATAGAACTGGCAATGGATATGATGGTGGTATTCTCTGATGAAGATGGTCGTAATGCTGATCGTGCTATTGTTGAAAGGCTTGGAAAAAAGATGGAGCTTCATACTGTTGAGGATCTTGAGGTAGAAACAATGGCTGTTAAGAACCTTGCTACAGAAAGAAAAGGGCAACATGCTGAGAGTACCCAGAGAATAATTGACCTTCTTAACAAATTCAAACGAGTTGCAGGTATGGAAGAAACCAGTGTCCTTCATGATCCTGTTATGCCCAGGATGCTTGGAAGGAGCACGTCTTTGGTCATCCCTCATGAGTTTCTATGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTGTTGCAAGTGGACAGTTATTGTTTGGTAGATTGAGTTCAATGAAGAAAGCTGAAGAGCAGAGAAAGGCAGTGGAGAAAATACGTATGTTATCAAAAGAAAATCCTGAGAACAGAGTTTTGGTTGCTGATAGTGGAGGAATACCACCATTAGTGCAACTCCTGTCCTATCCAGATTCAAAAATACAAGAGCATGCTGTGACAGCACTTTTAAATTTATCAATTGATGAGGGTAACAAGAAGCTTATATCTAAAGAAGGGGCAATTCCAACTATTATAGAAGTGTTGGAGAATGGGAGTATTGTGGCTAAAGAAAATTCTGCAGCAACTTTATTTAGCTTGTCAATGCTTGATGAGATCAAAGAGATTGTGGGTCAATCAAATGGGTTTCCACCTTTGGTAGAATTGTTGAGGAGTGGGACAGTTAGAGGGAAGAAAGATGCTGCTACAGCTCTTTTCAACTTATCTCTCATCCATGCAAATAAAGGTAGGGCCATTGAAGCTGGCATTGTGCCACCTTTACTTCAATTGCTCAAAGACATGAACTTAGGCATGATTGATGAAGCACTCTCAATTTTGCTACTCCTTGTATCAAATTCAGAAGGAAGACAAGAGATTGGACAACTATCCTTCATTGAAACTCTTGTTGGGTTCATCCGAGAAGGGAGCCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTTGAGTTGTGTTCAAGTAACTCATCCTTTATATTGGCAGCACTTCAATTTGGAGTGTATGAGCATTTAATTGAGATCAAAGAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATCTTAGAGCTTGTAAGCAAGAGCGAGCAAATTTAA 1527 0.4178 MLPLMEDLRDLQQPIPQNGVAWLIKLKDALLSAKDLLRLCSQGSKIHLALEGEAVMIKFQSVYEKLSQAFDGVPGDELGISDEVREQLELMHVQLRRGKRRTDTQDIELAMDMMVVFSDEDGRNADRAIVERLGKKMELHTVEDLEVETMAVKNLATERKGQHAESTQRIIDLLNKFKRVAGMEETSVLHDPVMPRMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQLLFGRLSSMKKAEEQRKAVEKIRMLSKENPENRVLVADSGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKKLISKEGAIPTIIEVLENGSIVAKENSAATLFSLSMLDEIKEIVGQSNGFPPLVELLRSGTVRGKKDAATALFNLSLIHANKGRAIEAGIVPPLLQLLKDMNLGMIDEALSILLLLVSNSEGRQEIGQLSFIETLVGFIREGSPKNKECAASVLLELCSSNSSFILAALQFGVYEHLIEIKESGTNRAQRKANAILELVSKSEQI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1136g00008 508 Coils Coil 238 258 - -
Sebi1136g00008 508 PANTHER U BOX DOMAIN-CONTAINING 16 229 - -
Sebi1136g00008 508 FunFam RING-type E3 ubiquitin transferase 226 508 - -
Sebi1136g00008 508 Pfam Armadillo/beta-catenin-like repeat 258 297 IPR000225 GO:0005515
Sebi1136g00008 508 Pfam Armadillo/beta-catenin-like repeat 342 379 IPR000225 GO:0005515
Sebi1136g00008 508 Pfam Armadillo/beta-catenin-like repeat 385 416 IPR000225 GO:0005515
Sebi1136g00008 508 Pfam U-box domain 206 234 IPR003613 GO:0004842|GO:0016567
Sebi1136g00008 508 ProSiteProfiles U-box domain profile. 205 229 IPR003613 GO:0004842|GO:0016567
Sebi1136g00008 508 SUPERFAMILY RING/U-box 205 230 - -
Sebi1136g00008 508 SMART arm_5 422 462 IPR000225 GO:0005515
Sebi1136g00008 508 SMART arm_5 340 380 IPR000225 GO:0005515
Sebi1136g00008 508 SMART arm_5 258 298 IPR000225 GO:0005515
Sebi1136g00008 508 SMART arm_5 299 339 IPR000225 GO:0005515
Sebi1136g00008 508 SMART arm_5 381 421 IPR000225 GO:0005515
Sebi1136g00008 508 Gene3D - 346 507 IPR011989 -
Sebi1136g00008 508 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 269 311 IPR000225 GO:0005515
Sebi1136g00008 508 SUPERFAMILY ARM repeat 237 502 IPR016024 -
Sebi1136g00008 508 Gene3D - 233 345 IPR011989 -
Sebi1136g00008 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 232 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1136g00008 Sebi-Chr1136 93953 96827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1136g00008 1 508 U-box Gene Family AT5G42340 51.038 3.09e-168 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1136g00008 - - qsa:O6P43_016363 716.072