Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1133g00003 ATGCTTCTCTCATGTCCACAACAGAGAACCTTTGAACCTGTTGAATTTGAGTGCAAAACCTGTAACCGCAAGTTCCCTTCTTTTCAAGCCCTTGGTGGCCACAGGGCTAGCCACAAGAGGGTGAAACTAGATGGTGAAGAATTACTCAAACAACAGGTCAAATCTGATCTGAGTTTGTGGAATAAACCCAAAATGCATGAGTGTTCTATTTGTGGCATGGAATTCTCTTTAGGCCAAGCACTTGGAGGTCACATGAGAAAGCACAGAGCTTTAATCAACCAAGGGATTTCTTCCATCAACCAAGTCATTGCAAAAATCCCAATTCTCAAGAGATCCAATAGTAAGAGGGTTATGTGCTTGGACTTGGACTTGAACTTGACACCTCTAGAGAATGACTTGATGTCTGGAAACAAATCACCCTTAGTTCCACTTTCTTTGTTCTGA 444 0.4212 MLLSCPQQRTFEPVEFECKTCNRKFPSFQALGGHRASHKRVKLDGEELLKQQVKSDLSLWNKPKMHECSICGMEFSLGQALGGHMRKHRALINQGISSINQVIAKIPILKRSNSKRVMCLDLDLNLTPLENDLMSGNKSPLVPLSLF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1133g00003 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Sebi1133g00003 147 Pfam C2H2-type zinc finger 16 40 - -
Sebi1133g00003 147 Pfam C2H2-type zinc finger 66 90 - -
Sebi1133g00003 147 SMART c2h2final6 66 88 IPR013087 -
Sebi1133g00003 147 SMART c2h2final6 16 38 IPR013087 -
Sebi1133g00003 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Sebi1133g00003 147 Gene3D Classic Zinc Finger 14 88 - -
Sebi1133g00003 147 PANTHER ZINC FINGER PROTEIN ZAT5 16 132 - -
Sebi1133g00003 147 SUPERFAMILY beta-beta-alpha zinc fingers 16 88 IPR036236 -
Sebi1133g00003 147 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Sebi1133g00003 147 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1133g00003 Sebi-Chr1133 45158 45601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1133g00003 15 143 C2H2 Transcription Factor Family AT2G37430 51.538 4.23e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1133g00003 zf-C2H2_6 2.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1133g00003 - - gmx:100526874 211.46