Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1133g00002 ATGAAGAGACAGAGAGATATGGGAGAACGGTTAGAGATAGAAAGCATAGATTTGGCCAATTGTCTAATGCTGCTCTCTCATCCTCCCCAAGAAAGCAAGAAAAAACCACACAGAAAAAGTTTTGGGCCTGTGGAATTTGAGTGCAAAACTTGCAACCGCAAATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGCCACAAAAGATCAAAACTTGATGGGGATGAAGATCTCAAAGCACATGCTACATCTCTAAGTTTAGGAAATAAACCCAAAACACATGAGTGCTCCATTTGTGGACAAGAATTTTCTCTTGGACAGGCACTTGGAGGCCACATGAGAAGACACAGAGCTGCCATCAATGAAGAGTTTTCTTCAATAAAACCTGTTGCTGTTAAAGTTCCAGTTTTTAATGGATCGAATAACAGATCAACAGGGGTTATGTGCTTGGACTTGAATTTAACCCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAAATATGGCACCAAATGTTGATGTCTTGGTCTGA 534 0.412 MKRQRDMGERLEIESIDLANCLMLLSHPPQESKKKPHRKSFGPVEFECKTCNRKFPSFQALGGHRASHKRSKLDGDEDLKAHATSLSLGNKPKTHECSICGQEFSLGQALGGHMRRHRAAINEEFSSIKPVAVKVPVFNGSNNRSTGVMCLDLNLTPLQNDLKLLFGNMAPNVDVLV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1133g00002 177 SUPERFAMILY beta-beta-alpha zinc fingers 46 117 IPR036236 -
Sebi1133g00002 177 Gene3D Classic Zinc Finger 43 117 - -
Sebi1133g00002 177 PANTHER ZINC FINGER PROTEIN ZAT5 13 160 - -
Sebi1133g00002 177 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Sebi1133g00002 177 Pfam C2H2-type zinc finger 95 119 - -
Sebi1133g00002 177 Pfam C2H2-type zinc finger 46 70 - -
Sebi1133g00002 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Sebi1133g00002 177 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Sebi1133g00002 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Sebi1133g00002 177 SMART c2h2final6 95 117 IPR013087 -
Sebi1133g00002 177 SMART c2h2final6 46 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1133g00002 Sebi-Chr1133 40525 41058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1133g00002 1 175 C2H2 Transcription Factor Family AT2G37430 46.111 1.12e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1133g00002 zf-C2H2_6 5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1133g00002 - - gmx:100527151 241.891