Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1130g00010 ATGACTCCTCTTTCTCACACATTGGCCTCTTCTTTTGTTATTGCAGTTTCAGCCACTCTTCGTTATGGGTATTATGGAGACTCTCGTATCCTTCTTGGGCCTGCCTCATCCCGTTTGGTGAAGGCGAGCTCTGTTTTTGTGAAGCAAGTTGAAGTATCAAACAAGCATGATAATCAAGTTATTCTTCATGCCTTCAATGAGAAGCCTGAGTTAAGCTCACAAATTAATTGGACTGCCTCGAATTTCTTCCTTGTTGGAGCATATCAAAGAAAGGGAATTTCTTTGTGGTTAAATAAAGGCTCCACTATCCGTTTGAGGTGGGAAGCACATTCTAGAGAAAAGAAGATTGATCAGCTACAACCTAAACAAACGAGGTTCCCCAGTGCAATTGCTGTTCGTAAGACTCTTAATAGTGGAGAAGCTGAATATATCGTTGAGGAAGATGATAGATACCACATTGGGGTTCTAAACATGAATGCCAGGAACATAATCATGACTATGAAAATTAATGTTTCGGCAAAGGTATATGATACCACCAAAGCCAATAAGAAGTGCTCTATCGCAAATGGATCTTGTAGGCTCAGTTTTATCTTCCCCAACACTCATTATGTTATTCTCACGACCACCAACAATGGAGATGGGGAACCGTATGTTGAATTTACTTTAGTGGCTCGTGTACTAACCTACGTCTTACTATTAGGATTTATTATGATTGTTGTTTATCTGATTCTGAAATTCCTGGGAATCTCTGATGGTGATGATCAGATTCAGAATACTAATGTGAGAGTGGACACATACAGATCAAGTAATGTAATTGCAACTCAAACTGAAACTGAGCCCTTGATGCAAGTTGAGTCAAATTCATTGTCATATGGAACCATTAAAGAAGATGATGATGGAGAATCAGAAGCATACAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTGTCATTTGTTATGATGAACAACGCAACAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTTCCGAGGGAGAGAGCAAAGTGTGTCCTATATGCCGAAGACTTGTTCACAAAGTACGAAGATTATTTCATAGTTAG 1113 0.3935 MTPLSHTLASSFVIAVSATLRYGYYGDSRILLGPASSRLVKASSVFVKQVEVSNKHDNQVILHAFNEKPELSSQINWTASNFFLVGAYQRKGISLWLNKGSTIRLRWEAHSREKKIDQLQPKQTRFPSAIAVRKTLNSGEAEYIVEEDDRYHIGVLNMNARNIIMTMKINVSAKVYDTTKANKKCSIANGSCRLSFIFPNTHYVILTTTNNGDGEPYVEFTLVARVLTYVLLLGFIMIVVYLILKFLGISDGDDQIQNTNVRVDTYRSSNVIATQTETEPLMQVESNSLSYGTIKEDDDGESEAYSSSSEELYDEKLCVICYDEQRNSFFVPCGHCATCYDCAQRISEGESKVCPICRRLVHKVRRLFHS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1130g00010 370 PANTHER OS05G0521000 PROTEIN 9 368 - -
Sebi1130g00010 370 Pfam Domain of unknown function (DUF4792) 61 111 IPR032008 -
Sebi1130g00010 370 Pfam Zinc finger, C3HC4 type (RING finger) 315 363 - -
Sebi1130g00010 370 SMART ring_2 318 357 IPR001841 -
Sebi1130g00010 370 Pfam Domain of unknown function (DUF4793) 141 242 IPR032010 -
Sebi1130g00010 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 370 IPR013083 -
Sebi1130g00010 370 SUPERFAMILY RING/U-box 307 364 - -
Sebi1130g00010 370 ProSiteProfiles Zinc finger RING-type profile. 318 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1130g00010 Sebi-Chr1130 112326 114412 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1130g00010 301 368 C3H Transcription Factor Family AT1G62370 30.882 8.30e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1130g00010 - - gmx:100794488 511.146