Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00075 ATGTTTTCTCCTTCCTCTTCTTGCACTGTTGCTGCTACTACTACTACTTCAGCAATCAAATGGAGGCTCTTTCACAAACCCATAACCCCTCTGCACGTTCTCTTCTGGATTGTCCTACTCTTCTGCTGCAACAAAGCCGTTTTGGCCGATTCCGACGAATCAGTGCTGATTCAGCTCAAGAACTCACTCTCTGACCCTTCGGGTTTGCTCTCGAGCTGGGACCCCACCAAGGGTTCGAGCCACTGTTCCTGGTTCGGTGTCCTCTGCGACTCTCTTTCACACCGCGTAGTCGCGATCAACGTCACCGGTAACGGAGGTAACCGAACAAACCCTTCTCCGTGTTCCAATTTTACTGAATTTCCCCTCTACGGTTTTGGAATTAGGAGGAGCTGTGAGGGTAGTCGAGGGGCATTGTTTGGGAAGTTTTCCCCTTTGTTCAGTGAGCTCACTGAGCTTAGGGTTTTGTCCCTTCCCTTCAACGGTTTGGAGGGTGTGATTCCTGATGAAATTTGGGGTATGGAGAAGTTGGAGGTTCTTGATCTTGAGGGAAATTTGATAAGTGGGTATCTTCCTGTTCGGTTTACTGGGTTGAGGAACTTGAGGGTTCTTAATCTAGGGTTTAATAGGATTGTTGGGAAGGTACCAAATTCATTGTCAAGTGTTGCAGGTTTGGAGGTTCTGAATTTGGCTGGAAATAGCATCAATGGTTCTGTTCCTGGTTTTGTTGGTAGGCTAAGAGGGGTGTATCTGTCTTTCAATCTGCTTGGTGGGACTATTCCGCAAGAGATAGGTGATGATTGTGGGAGGCTTGAGCATCTTGATTTGTCTGGGAATTTCCTGGTTCAGGGGATTCCAAGTAGTTTGGGGAATTGTACTGAGTTGAGGACTCTTTTGCTGTATTCGAATATATTGGAGGATGTTATTCCAGCTGAGCTTGGTAAGCTTAAGAAGCTTGAGTTGTTGGATGTTTCAAGGAATACTCTTGATGGTTTGGTACCCCATGAGCTTGGGAATTGTACAGAATTGTCTGTCCTTGTTTTGTCTAATCTGTTTAATCCACTGCCGGATGTCAATGGTACAGCAAGGGACTCTTCATTTGAGCAGTCGGTTTCTACAAATTCAAATGATGAATACAATTATTTTGAAGGTTCGATTCCTGAGGAAATTATGAGCCTTCCTAAGCTGAGAATACTGTGGGCGCCAAGGGCAAATCTGGAATACAGCTTTCCAAGCAGTTGGGATACTTGTGATAACTTGGAGATTCTCAATTTGGCTCGCAATGATTTCACTGGGGATTTTCCTAATCAGCTTAGTCGCTGCAAGAAGCTTCATTTTCTTGATTTAAGCTCAAACAACCTTACTGGCAAACTCCCAGAAGAACTTCCTGTTCCTTGTATGACTGTGTTTGATGTTAGTGGGAATGTCTTATCTGGCCCAGTTCCTAAATTCTCTATTGATGCATGTCCCTCAGTTCCTTCGTGGAATGGAAATCTGTTTGAAACTGACAACAGAGCCCTTCCATATAGGTCCTTTTTTGCATCAAAGGTTCTTGGAGGGCCCTTTTTGTTGTCACTTGGAGAAGTTGGCCGTTCCATTTTTCACAACTTTGGTCAAAATAACTTCATTAGCATGGAGTCATTGCCAATAGCACGTGACAAATTGGGGAAGGGATTTGTTTACTCAATTCTTGTTGGAGGAAACAACCTGACAGGGCCGTTTCCTACTAATTTATTTGAGAACTGTGATGGATTAAATGCAATGCTTTTAAATGTGAGTTATACTGGGTTATCTGGCCCAATTCCTTCCAAGTTTGGCGGAATGTGCAGATCGTTAAAGTTCTTGGATGCATCTGGAAATCAGATTACCGGGCCAATCCCCCCTGGTTTAGGGGACTTGGTGTCTCTTGTTGCTCTGAACCTGAGTCAGAACCATTTACAAGGTCAGATTCCCACCAGCCTTGGCCAGATGAAGGATCTGAAGTTTCTCTCTTTGGCTGATAATAACTTAAGTGGTTCCATTCCCACCAGCCTTGAGCAGCTGTATTCTTTACAAGTGTTGGATCTCTCTTCAAATTCTCTGTCTGGTGAAATTCCAAAAGGTATTGAAAACTTGAGAAATCTGACTGATATTTTTCTCAACAATAACAATCTCTCTGGACAGATTCCTGCTGGTTTGGCAAATGTCACTACGCTGTCAGCGTTTAACGTGTCATTCAATAACTTATCTGGATCTTTGCCATCAAATAGTAACTTGATAAAATGCAGCAGTGCTGTTGGGAATCCTTACATACGTTCTTGCAAAGGAGTTTCTCTTTCTGTGCCATCAGCAGATCAACATGGGCTGGTTGATAATTCTAATTCTTATACTGCTGCACCACCAGAACCTATGGGAAAAAAGAGTGGGAATGGTTTCAACTCTATTGAGATAGCATCTATAACTTCTGCATCTGCCATTGTGTCTGTTCTTCTAGCCCTAATTGTGCTTTTCATTTATACGCGGAAGTGGAGCCCAAGGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTTACAGTGTTCACTGACATTGGAGTTCCGTTGACATTTGAAAATGTTGTCCGTGCCACTGGAAATTTCAACGCAAGCAACTGCATTGGGAATGGGGGATTTGGGGCAACTTACAAGGCAGAGATATCACCAGGAAACTTAGTGGCAATAAAACGTTTGGCTGTTGGACGATTCCAAGGTGCTCAACAATTCCATGCAGAGGTCAAGACACTTGGAAGGCTTCGTCATCAAAATCTTGTCACTCTGATTGGTTATCATGCTAGTGATACTGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATTTGGAAAAGTTTATCCAGGAGAGGTCCAGAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGATATAGCTCGAGCACTTGCATACCTGCATGATCAGTGTGTACCGCGGGTGCTTCATCGAGATGTCAAGCCAAGTAATATCTTATTGGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCAGAAACTCATGCTACCACTGGCGTAGCAGGAACATTTGGTTATGTTGCTCCTGAATATGCCATGACATGTCGTGTTTCTGACAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTACTCTCAGACAAGAAGGCATTGGATCCTTCATTTTCTTCATATGGGAATGGTTTCAACATAGTAGCATGGGCATGCATGCTTCTGCGACAAGGCCAGGCAAATGAGTTCTTCACTGCTGGTTTATGGGAAGCAGGACCTGCAGATGATTTGGTTGAGGTCCTACACTTAGCTGTTGTTTGTACTGTGGACTCACTCTCTACCAGACCTTCAATGAAACATGTTGTACGGCGGCTTAAGCAACTTCAACCACCATCATGTTAG 3453 0.4367 MFSPSSSCTVAATTTTSAIKWRLFHKPITPLHVLFWIVLLFCCNKAVLADSDESVLIQLKNSLSDPSGLLSSWDPTKGSSHCSWFGVLCDSLSHRVVAINVTGNGGNRTNPSPCSNFTEFPLYGFGIRRSCEGSRGALFGKFSPLFSELTELRVLSLPFNGLEGVIPDEIWGMEKLEVLDLEGNLISGYLPVRFTGLRNLRVLNLGFNRIVGKVPNSLSSVAGLEVLNLAGNSINGSVPGFVGRLRGVYLSFNLLGGTIPQEIGDDCGRLEHLDLSGNFLVQGIPSSLGNCTELRTLLLYSNILEDVIPAELGKLKKLELLDVSRNTLDGLVPHELGNCTELSVLVLSNLFNPLPDVNGTARDSSFEQSVSTNSNDEYNYFEGSIPEEIMSLPKLRILWAPRANLEYSFPSSWDTCDNLEILNLARNDFTGDFPNQLSRCKKLHFLDLSSNNLTGKLPEELPVPCMTVFDVSGNVLSGPVPKFSIDACPSVPSWNGNLFETDNRALPYRSFFASKVLGGPFLLSLGEVGRSIFHNFGQNNFISMESLPIARDKLGKGFVYSILVGGNNLTGPFPTNLFENCDGLNAMLLNVSYTGLSGPIPSKFGGMCRSLKFLDASGNQITGPIPPGLGDLVSLVALNLSQNHLQGQIPTSLGQMKDLKFLSLADNNLSGSIPTSLEQLYSLQVLDLSSNSLSGEIPKGIENLRNLTDIFLNNNNLSGQIPAGLANVTTLSAFNVSFNNLSGSLPSNSNLIKCSSAVGNPYIRSCKGVSLSVPSADQHGLVDNSNSYTAAPPEPMGKKSGNGFNSIEIASITSASAIVSVLLALIVLFIYTRKWSPRSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNASNCIGNGGFGATYKAEISPGNLVAIKRLAVGRFQGAQQFHAEVKTLGRLRHQNLVTLIGYHASDTEMFLIYNYLPGGNLEKFIQERSRRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGQANEFFTAGLWEAGPADDLVEVLHLAVVCTVDSLSTRPSMKHVVRRLKQLQPPSC 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00075 1150 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515
Sebi112g00075 1150 CDD STKc_IRAK 877 1145 - -
Sebi112g00075 1150 Gene3D Ribonuclease Inhibitor 48 245 IPR032675 -
Sebi112g00075 1150 Pfam Leucine rich repeat N-terminal domain 49 90 IPR013210 -
Sebi112g00075 1150 SUPERFAMILY Protein kinase-like (PK-like) 853 1142 IPR011009 -
Sebi112g00075 1150 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 311 1144 - -
Sebi112g00075 1150 Gene3D Ribonuclease Inhibitor 246 376 IPR032675 -
Sebi112g00075 1150 Gene3D Phosphorylase Kinase; domain 1 834 946 - -
Sebi112g00075 1150 SUPERFAMILY L domain-like 558 747 - -
Sebi112g00075 1150 ProSitePatterns Protein kinases ATP-binding region signature. 877 899 IPR017441 GO:0005524
Sebi112g00075 1150 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 245 355 - -
Sebi112g00075 1150 Pfam Protein kinase domain 874 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00075 1150 SUPERFAMILY L domain-like 51 350 - -
Sebi112g00075 1150 Gene3D Ribonuclease Inhibitor 558 647 IPR032675 -
Sebi112g00075 1150 SMART LRR_typ_2 704 727 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 173 196 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 149 172 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 315 338 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 632 656 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 197 221 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 242 266 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 680 703 IPR003591 -
Sebi112g00075 1150 SMART LRR_typ_2 267 291 IPR003591 -
Sebi112g00075 1150 ProSiteProfiles Protein kinase domain profile. 871 1145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00075 1150 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 947 1149 - -
Sebi112g00075 1150 SUPERFAMILY L domain-like 378 491 - -
Sebi112g00075 1150 Gene3D Transferase(Phosphotransferase) domain 1 947 1147 - -
Sebi112g00075 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 991 1003 IPR008271 GO:0004672|GO:0006468
Sebi112g00075 1150 SMART serkin_6 871 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00075 1150 Gene3D Ribonuclease Inhibitor 377 556 IPR032675 -
Sebi112g00075 1150 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 371 547 - -
Sebi112g00075 1150 Pfam Leucine rich repeat 194 234 IPR001611 GO:0005515
Sebi112g00075 1150 Pfam Leucine rich repeat 635 693 IPR001611 GO:0005515
Sebi112g00075 1150 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 552 775 - -
Sebi112g00075 1150 Gene3D Ribonuclease Inhibitor 648 768 IPR032675 -
Sebi112g00075 1150 PRINTS Leucine-rich repeat signature 443 456 - -
Sebi112g00075 1150 PRINTS Leucine-rich repeat signature 680 693 - -
Sebi112g00075 1150 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 835 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00075 Sebi-Chr112 1520760 1524212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00075 30 1150 Receptor kinase-like Gene Family AT3G02130 63.923 0.0 1355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Sebi112g00075 Pkinase 2.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00075 - - gmx:100803891 1862.43