Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00057 ATGTTAGCTACTGGCCAATGGTATCCTGCTCATGCAACCTTCTATGGTGATTTGCAAGGCAGAGGAACCATGGGGGGTGCTTGTGGTTATGGTAATCTCTTCCAGCAAGGGTATGGGCTTGCAACCACAGCACTAAGCACAGCTCTATACAACAATGGATTCTCTTGTGGTGCTTGTTTTGAAATCATATGTGACAATGACCCCCAATGGTGCATAAAGGGTGCAGGTGCAATCAGAGTGACGGCAACAAATCTTTGTCCTCCCAATTACTCAAAGCCTTCTGGCAATTGGTGTAACCCTCCATTAAGACACTTTGACTTGACACAGAAAATGTTCACCACTATTGCTTATTACAGAGCAGGGATCATCCCTGTTCTATATCGTCGTGTTCCATGCTTCAAAAGTGGGGGTGTCAAGTTTGAGATCAGAGGAAACCCTTATTTTTTTTCTATTTTGGTGTACAATGTGGCCAATGCTGGTAATGTTTACCATGTAAGTATCAGAGGGTCTTCTACCGGTTGGATTCAAATGTTTCACAATTGGGGACAAATTTGGAGTGTTGATAAAGTGAATTTCGTAGGGCAAGCATTGTCATTTCAAGTTACCACCAGTGATAGTAAAATGTTGGAGTTTGATAATGTCATTCCTTCATATTGGCGATTCGGACAGACCTTTCAGGCCAATAGAAATTTTTAG 696 0.4224 MLATGQWYPAHATFYGDLQGRGTMGGACGYGNLFQQGYGLATTALSTALYNNGFSCGACFEIICDNDPQWCIKGAGAIRVTATNLCPPNYSKPSGNWCNPPLRHFDLTQKMFTTIAYYRAGIIPVLYRRVPCFKSGGVKFEIRGNPYFFSILVYNVANAGNVYHVSIRGSSTGWIQMFHNWGQIWSVDKVNFVGQALSFQVTTSDSKMLEFDNVIPSYWRFGQTFQANRNF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00057 231 Gene3D - 137 231 IPR036749 -
Sebi112g00057 231 SUPERFAMILY Barwin-like endoglucanases 6 155 IPR036908 -
Sebi112g00057 231 Gene3D - 1 132 IPR036908 -
Sebi112g00057 231 PANTHER EXPANSIN-A15 5 229 IPR002963 GO:0009664
Sebi112g00057 231 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 137 IPR007112 -
Sebi112g00057 231 PRINTS Expansin signature 78 88 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 64 75 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 213 229 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 136 148 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 112 125 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 37 51 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 148 169 IPR002963 GO:0009664
Sebi112g00057 231 PRINTS Expansin signature 95 112 IPR002963 GO:0009664
Sebi112g00057 231 Pfam Expansin C-terminal domain 138 216 IPR007117 -
Sebi112g00057 231 SMART dpbb_1 42 127 IPR007112 -
Sebi112g00057 231 SUPERFAMILY PHL pollen allergen 134 226 IPR036749 -
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 174 188 IPR007118 GO:0005576
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 6 21 IPR007118 GO:0005576
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 120 136 IPR007118 GO:0005576
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 24 42 IPR007118 GO:0005576
Sebi112g00057 231 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Sebi112g00057 231 CDD DPBB_EXPA_N 6 132 - -
Sebi112g00057 231 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 147 227 IPR007117 -
Sebi112g00057 231 Pfam Lytic transglycolase 42 127 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00057 Sebi-Chr112 938051 939208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00057 7 231 Expansin Gene Family AT5G39270 59.556 5.89e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00057 - - zju:107415875 339.732