Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00052 ATGGCACAATCCATCTGCTGGTGGATTTTCTTCATATTACTCTATGTTCCTGGTTTTTCTAGGAATGCTTCTTTGATATCTTCTGTGGTTTATAATGAAATCACAGTAAAACACAGTGAAGTGAATGGTCTGTTAAAGTGGAAAGCCAGCTTTGATAACCATAGCCAAGCTCTCTTGTCATCTTGGACAGGCACTGATCCTTGCAAATGGGAAGGAATTCTTTGTGATAAATCCAAGTTTGTCTCTAGCATAAATCTTGCAAATTATGGACTTCAAGGTACACTCCACACTCTCAACTTTTCCTTATTCCCTAACCTCCTTAGTCTTAACATCCACAACAACTCCTTTTATGGAACCCTTCCTCCACAAATCATAAACATGTCTAAACTCAACCACTTGAACCTTTCTCTAAATTCTTTTGGTGGTTACATCCCTAAAGAATTGTGGACACTGAGTAGTCTACGTAGCCTTGATATTTCCTTGTGCCATCTAAGTGGAGCAATCCCAAATTCCATAGCAAATTTGGCCAATTTATCAGTTCTAAATTTAGGAAGCAACAATCTTTCTGGCTACATTCCTCTAGAGATTGGGAAATTAAAGAGCTTGGAGTCTGTAGATATTGGATACAATCATTTTTTTGGTTCCATTCCACATGAAATTGGAATGTTGACAAATCTTAAGGATATTGATTTGTCACATAACACTTTCTCTGGTAATATCCCTTCTACAATTGGAAATTTGGTCAATTTGAATGTCCTTGAACTATATAACAACCACCTTTATGGATCAATTCCTGTTACTATTGGAAACTTGACAAAGCTCACTGGATTAGGCTTGGACTTAAATGATTTTTCTGGATCAATTCCTGCATCTATAGGAAATCTGATCAATTTGGATTCCCTCACTCTTGAAGGAAATAGACTTTCTGGTTCTATTCCTCCCACTATGGGACATTTGACATTGATCACCATGCTAGGATTGTCCTCTAACAAACTTAATGCTAGCATTCCAAGGGAAATGAATAACATAACCAACTTGTATATCTTACAATTATCTGATAATGATTTCACTGGCTATTTGCCACATCAAATCTGCTCTGGTGGGTCATTAGCATACTTTGCTGCGGATCACAACCATTTAATAGGCAGGCTTCACCTTTCTTCAAACCACTTGAGTGGAAACCTTCCTAAAGAACTAGGAAATCTAAAATCATTAGTTGAGGTTAAGATCAACAACAATCATTTCTCAGGAAACATTCCCACAGAAATAGGATTGATAAGGAATCTTCAACACTTGGATTTGGCAAGAAATGAGTTTAGTGGCACAATACCAAATCAAGTTGTGGGGTTACCCAACTTATTGGAATTGAATTTGAGCAACAATAATATAAAAGGAAGCATTCCCTCTGGGTTTAGCCAACTACAGCCTCTTGAATCTCTTGATCTCAATGGCAATCATTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGAGGCGCCTGCAATTGTTGAACCTCTCACACAACAATCTTTCTGGAACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGATTTCTGTTGACATATCTTACAATCAATTAGAAGGGCCACTTCCAAAAAATCAGGCCTTTCTTAAATCCCCTATAGATTCATTGAGAAACAATAAAGGCTTGTGTGGTAATGTTACTGGCTTGGCACTTTGCCCAATCAATCACAGTCCAAAGAGTGTCAAAGTCATGCTATTGACAGAGAAAGAAGAAGAAACTCAAATTGAACAACAAAATGGAGAACTCTTTTCAATATGGAGTTATGATGGGAAAATAATTTATGAAAATATCATTGAAGCTACAGAGAATTTTGATGACAAATATCTCATTGCTGTGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAGGCATGGTTGTTGCAGTGAAGAAACTTCACTCTATAACAAATGAGGAAACATCCACTTTCAAAGCTTTTACAAGTGAGGTTCAAGCCTTGACAGAACTCAAACACCGTAACATTGTAAAATTGTATGGATTCTGTTCACATTCACAATTCTCATTTTTGGTTTATGAGTTCTTAGAAGGAGGGAGCCTTGATCAAATACTAAACAATGAGACACAAGCAATGGCATTTGATTGGAAAAGGAGGGTGAATGTTGTAAAAGGTTTGGCTAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCCATAATTCATCGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATCTCTCTGATTTTGGGACAGCTAAGTTTCTGAGGCCTGATTCTTGTAGTTGGACACCACTTGTTGGCACCTTTGGTTATATTGCTCCAGATTTGTTGGATGAACGACTTCCTCAACCTATGAATTCAATAGTTGGTGAGATCATCATGATAGCAAGGTTGGCATTTACTTGCTTGAGTGAACATCCACATTCTCGCCCAACAATGGATCAAGTATCTAAAGAGCTTTTGATTGGAAAATCACCTTTAGCAAACTGGTTCCCTATGATCAAACTTGAACAACTACTCTAA 2580 0.3744 MAQSICWWIFFILLYVPGFSRNASLISSVVYNEITVKHSEVNGLLKWKASFDNHSQALLSSWTGTDPCKWEGILCDKSKFVSSINLANYGLQGTLHTLNFSLFPNLLSLNIHNNSFYGTLPPQIINMSKLNHLNLSLNSFGGYIPKELWTLSSLRSLDISLCHLSGAIPNSIANLANLSVLNLGSNNLSGYIPLEIGKLKSLESVDIGYNHFFGSIPHEIGMLTNLKDIDLSHNTFSGNIPSTIGNLVNLNVLELYNNHLYGSIPVTIGNLTKLTGLGLDLNDFSGSIPASIGNLINLDSLTLEGNRLSGSIPPTMGHLTLITMLGLSSNKLNASIPREMNNITNLYILQLSDNDFTGYLPHQICSGGSLAYFAADHNHLIGRLHLSSNHLSGNLPKELGNLKSLVEVKINNNHFSGNIPTEIGLIRNLQHLDLARNEFSGTIPNQVVGLPNLLELNLSNNNIKGSIPSGFSQLQPLESLDLNGNHLSGTIPRIVGELRRLQLLNLSHNNLSGTIPSSFDEMSSLISVDISYNQLEGPLPKNQAFLKSPIDSLRNNKGLCGNVTGLALCPINHSPKSVKVMLLTEKEEETQIEQQNGELFSIWSYDGKIIYENIIEATENFDDKYLIAVGGQGCVYKVELPTGMVVAVKKLHSITNEETSTFKAFTSEVQALTELKHRNIVKLYGFCSHSQFSFLVYEFLEGGSLDQILNNETQAMAFDWKRRVNVVKGLANALSYMHHDCSPPIIHRDISSKNVLLDLEYEAHLSDFGTAKFLRPDSCSWTPLVGTFGYIAPDLLDERLPQPMNSIVGEIIMIARLAFTCLSEHPHSRPTMDQVSKELLIGKSPLANWFPMIKLEQLL 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00052 859 FunFam Leucine-rich repeat receptor protein kinase MSP1 584 699 - -
Sebi112g00052 859 Gene3D Ribonuclease Inhibitor 191 286 IPR032675 -
Sebi112g00052 859 Gene3D Ribonuclease Inhibitor 37 190 IPR032675 -
Sebi112g00052 859 Gene3D Ribonuclease Inhibitor 287 383 IPR032675 -
Sebi112g00052 859 SMART LRR_typ_2 450 474 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 175 199 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 223 246 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 103 127 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 295 319 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 343 367 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 498 521 IPR003591 -
Sebi112g00052 859 SMART LRR_typ_2 247 271 IPR003591 -
Sebi112g00052 859 Pfam Protein kinase domain 627 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00052 859 ProSiteProfiles Leucine-rich repeat profile. 452 474 IPR001611 GO:0005515
Sebi112g00052 859 FunFam Leucine-rich receptor-like protein kinase family protein 193 289 - -
Sebi112g00052 859 FunFam Leucine-rich repeat receptor protein kinase EMS1 290 383 - -
Sebi112g00052 859 SUPERFAMILY Protein kinase-like (PK-like) 603 839 IPR011009 -
Sebi112g00052 859 SUPERFAMILY L domain-like 169 541 - -
Sebi112g00052 859 SUPERFAMILY L domain-like 47 202 - -
Sebi112g00052 859 Gene3D Transferase(Phosphotransferase) domain 1 700 804 - -
Sebi112g00052 859 ProSitePatterns Tyrosine protein kinases specific active-site signature. 745 757 IPR008266 GO:0004672|GO:0006468
Sebi112g00052 859 Pfam Leucine rich repeat 427 487 IPR001611 GO:0005515
Sebi112g00052 859 Pfam Leucine Rich Repeat 500 520 IPR001611 GO:0005515
Sebi112g00052 859 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515
Sebi112g00052 859 Gene3D Phosphorylase Kinase; domain 1 581 699 - -
Sebi112g00052 859 FunFam Os07g0541700 protein 700 783 - -
Sebi112g00052 859 FunFam Nuclear pore complex protein NUP107 37 192 - -
Sebi112g00052 859 Pfam Leucine rich repeat N-terminal domain 39 76 IPR013210 -
Sebi112g00052 859 Gene3D Ribonuclease Inhibitor 384 569 IPR032675 -
Sebi112g00052 859 PRINTS Leucine-rich repeat signature 498 511 - -
Sebi112g00052 859 PRINTS Leucine-rich repeat signature 477 490 - -
Sebi112g00052 859 PANTHER LEUCINE RICH REPEAT KINASE 2 223 794 - -
Sebi112g00052 859 FunFam Leucine-rich repeat receptor-like protein kinase TDR 384 571 - -
Sebi112g00052 859 ProSiteProfiles Protein kinase domain profile. 621 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00052 Sebi-Chr112 898968 902762 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00052 25 796 Receptor kinase-like Gene Family AT4G08850 37.811 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi112g00052 Pkinase 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00052 - - gmx:100800924 731.095