Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00050 ATGGCTACTTCGAGGACTGTGAAGGACGTTTCGCCTCACGAGTTCGTTAAGGCATACTCTGCTCACCTCAAACGATCTGGCAAGATGGAGCTTCCAGAGTGGACGGATATTGTCAAAACTGCAAGATTTAAAGAATTGGCTCCCCATGATCCTGATTGGTATTATGTTAGAGCGGCTTCCATGGCAAGGAAGATCTACTTGAGAGGGAGGTCTTGGTGTTGGTGCATTTCAGAGGATTTATGGTGGAGCCAGAGGAATGGTAGTCGTCCTCCTCATTTTTGCAAGAGCAGTGGCGCCATTGCTCGTCACATTCTTCAACAGTTGCAGAACATGAGCATCATTGAGCTTGACACCAAAGGTGGCAGGAGGATCACATCCAGTGGTCGGCGGGATCTTGACCAAGTGGCTGGGGCGGATTGTAGTTGCCCCTTGATGTATGCTGAGGGTTGCTAG 453 0.4967 MATSRTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPHDPDWYYVRAASMARKIYLRGRSWCWCISEDLWWSQRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGGRRITSSGRRDLDQVAGADCSCPLMYAEGC 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00050 150 SUPERFAMILY "Winged helix" DNA-binding domain 6 137 IPR036390 -
Sebi112g00050 150 Gene3D - 1 140 IPR036388 -
Sebi112g00050 150 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Sebi112g00050 150 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi112g00050 150 FunFam 40S ribosomal protein S19 2 141 - -
Sebi112g00050 150 Pfam Ribosomal protein S19e 6 137 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi112g00050 150 PANTHER 40S RIBOSOMAL PROTEIN S19 2 141 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00050 Sebi-Chr112 882942 884697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00050 1 137 Cytoplasmic Ribosomal Protein Gene Family AT5G15520 78.102 1.19e-78 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00050 K02966 - gmx:100305587 239.58