Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00049 ATGTTACTCTATGTTCCTTTACTACTTTCTTCACCCTATGTTGCTGGTTTTTCTAGGAATGTTTCATTGACATTTTCTGCAGTTCATAATGAAATCTCAGTAAAAGACAGTGAAGTGAATGGTCTGCTAAAGTGGAAAGATAGCTTTGATAACCATAGCCAAGCTCTATTGTCATCTTGGAAAGGCACTGATCCTTGCAAATGGGAAGGAATTCTATGTGATAAATACTCCAAGTCTGTCTCTAGCATAAATCTTGCAAATTATGGACTGAAAGGAAATTTGATCAGTTTGCATACCCTCTACCTCCAAGGAAACAATCTCTCTAGTTCTATTCCTTCCACAATAGGAAATTTGGTATTACTCACCTCACTGGGATTGTCCTCTAACAATCTTAATGGCTGGATTCCACAGGAAATGAATAACATAACCAACTTTAAATTCTTGCAATTATCTAATAATGATTTCATTGGTCATTTGCCACCTCAAATCTGCTCTGGTGGGTCACTAGCATTCTTTGCAGCTGATCACAATCGTCTAACAGGTCCAACACCAACAAGTTTGAAGAATTGTTCTAGTCTTGTCAGAATCAGGCTTGAAGAAAACCAAATTGCAGGAAATATAACAGAAGATTTTGGCACATATCCAAATTTGAAATACATTGATTTAAGTGGCAATAGATTTTATGGTCACATTTCACCAAACTGGGGGAAGTGCCTTAATCTTGATACCCTTAAGATATCAAACAACAATATTTCTGGTGCTATACCACTTCAATTTGTTGAGGCAACCAACTTAGGAAGGCTTCACCTTTCTTCAAATAACTTGATAGGAAACCTTCCCAGAGAACTAGGGATTCTAAAATCATTAATTGAGGTTAAGATCAACAACAATCATATCTCAGGAAACATTCCCACAGAAATAGGACTGATAAGGAATCTTCAATACTTGAATCTAGGAGGAAATGAGTTCAGTGGCACAATACCAAAACAAGTTGTGGGGTTACCTAACTTATTGGAATTGAATTTGAGCAATAATAAAATAAAGGGAAGCATTCCCTCTGAGTTTAGCCAACTACAGCCTCTTGAATCCCTTGATCTCAGTGGCAATTCTTTGAGTGGAACAATACCAAGAATAGTTGGAGAGTTGCGGCGCCTGCAATTGTTGAACCTCTCACACAACAATCTTTCTGACACTATTCCATCTAGTTTTGATGAGATGTCAAGCTTGATTTCTGTTGACATATCTTACAACCAATTAGAAGGTCCACTTCCAAAAAATCAGGCCTTCCTTAAATCACCAATAGATTCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTTACTGGCTTGGCACTTTGCCCAACCAATCACAGTCCAAAGAGTGTCAAAGTCATGCTATTGGGAGGGCAAGGGTGTGTTTACAAGGTTGAGTTGCCTACAAGCTTGGTTGTTGCTGTAAAGAAACTTCACTCTCTAACAAATGAAGAAACATCCAATTTCAAAGCTTTTACAAGTGAGGTTCAAGCATTGACAGAACTCAAACACCGAGGGAGCCTTGATCAAATGCTAAACAATGAGACACGAGCAATGGCATTTGATTGGAAAAGGAGGGTAAATGTTGTAAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGATTGTTCACCTCCCATAGTTCATTGTGACATATCAAGCAAGAATGTTCTTCTAGATCTTGAATATGAAGCTCATATTTCTGATTTTGGGACTGCTAAGTTTCTGAAGCCTGGTCCATGCAGTTGGACCCCACTTGTTGGCACCTTAGGTTATATTGCTCCAGAAATTCTTATGGGAAAGCATCCAGGAGAGCTTATGTCTTCATTGGTGTCATCATCTACAGCGTTAATGACTTACAATTTATTCTTGATTGATGTGTTAGATAAACGACCTCCTCAACCTATGAAATCAATAGTTGGCGAGGTCATTATGATAGCAACATTGGCATTAGCTTGCTTAAGTGAAAATCCAAATTCTCGCCCAACCATGGATCAAGCTTAA 2040 0.3814 MLLYVPLLLSSPYVAGFSRNVSLTFSAVHNEISVKDSEVNGLLKWKDSFDNHSQALLSSWKGTDPCKWEGILCDKYSKSVSSINLANYGLKGNLISLHTLYLQGNNLSSSIPSTIGNLVLLTSLGLSSNNLNGWIPQEMNNITNFKFLQLSNNDFIGHLPPQICSGGSLAFFAADHNRLTGPTPTSLKNCSSLVRIRLEENQIAGNITEDFGTYPNLKYIDLSGNRFYGHISPNWGKCLNLDTLKISNNNISGAIPLQFVEATNLGRLHLSSNNLIGNLPRELGILKSLIEVKINNNHISGNIPTEIGLIRNLQYLNLGGNEFSGTIPKQVVGLPNLLELNLSNNKIKGSIPSEFSQLQPLESLDLSGNSLSGTIPRIVGELRRLQLLNLSHNNLSDTIPSSFDEMSSLISVDISYNQLEGPLPKNQAFLKSPIDSLRNNKGLCGNVTGLALCPTNHSPKSVKVMLLGGQGCVYKVELPTSLVVAVKKLHSLTNEETSNFKAFTSEVQALTELKHRGSLDQMLNNETRAMAFDWKRRVNVVKGVANALSYMHHDCSPPIVHCDISSKNVLLDLEYEAHISDFGTAKFLKPGPCSWTPLVGTLGYIAPEILMGKHPGELMSSLVSSSTALMTYNLFLIDVLDKRPPQPMKSIVGEVIMIATLALACLSENPNSRPTMDQA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00049 679 Gene3D Ribonuclease Inhibitor 95 455 IPR032675 -
Sebi112g00049 679 Gene3D Transferase(Phosphotransferase) domain 1 518 679 - -
Sebi112g00049 679 FunFam Os07g0541700 protein 515 592 - -
Sebi112g00049 679 Pfam Protein kinase domain 517 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00049 679 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 143 457 - -
Sebi112g00049 679 ProSiteProfiles Leucine-rich repeat profile. 336 358 IPR001611 GO:0005515
Sebi112g00049 679 PANTHER LEUCINE RICH REPEAT KINASE 2 82 459 - -
Sebi112g00049 679 Pfam Leucine Rich Repeat 384 404 IPR001611 GO:0005515
Sebi112g00049 679 Gene3D Ribonuclease Inhibitor 30 94 IPR032675 -
Sebi112g00049 679 SUPERFAMILY Protein kinase-like (PK-like) 467 679 IPR011009 -
Sebi112g00049 679 ProSiteProfiles Protein kinase domain profile. 459 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00049 679 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Sebi112g00049 679 Gene3D Phosphorylase Kinase; domain 1 456 517 - -
Sebi112g00049 679 FunFam Leucine-rich repeat receptor-like kinase 37 142 - -
Sebi112g00049 679 PRINTS Leucine-rich repeat signature 361 374 - -
Sebi112g00049 679 PRINTS Leucine-rich repeat signature 382 395 - -
Sebi112g00049 679 SUPERFAMILY L domain-like 43 206 - -
Sebi112g00049 679 Pfam Leucine rich repeat 215 275 IPR001611 GO:0005515
Sebi112g00049 679 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Sebi112g00049 679 SMART LRR_typ_2 94 118 IPR003591 -
Sebi112g00049 679 SMART LRR_typ_2 334 358 IPR003591 -
Sebi112g00049 679 SMART LRR_typ_2 382 405 IPR003591 -
Sebi112g00049 679 SUPERFAMILY L domain-like 174 445 - -
Sebi112g00049 679 ProSitePatterns Tyrosine protein kinases specific active-site signature. 559 571 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00049 Sebi-Chr112 877994 881370 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00049 468 611 Receptor kinase-like Gene Family AT4G08850 47.953 1.94e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi112g00049 Pkinase 4.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00049 - - qsu:111996837 619.002