Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00030 ATGACAATTGTAGAGTCTGGTGCTTTACCTATCGTTCTTCCTTTCTCCTCTCCCACTATCATGCATATTATTATAGCTAAAGCATATCAGATTAAAAATTTTCAGGTCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGCACACTTCTATGGACGTGTTGAAACATACCCTTTCGATGACAATCATGCAGGAAAAGGTAGAACTGGTTTAATGGTGTGTGCATACCTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGTTAGACGGACAACTAATAATGAAGGAGTATCAATACCAAGCCAACGTCGTTATGTGGGGTACTGGGAAAGTCTACTTTCTACCCCTAGGGGCAATGGATATGGATCACCAATGGTAAACTTGCCTCAACCATGTAGCAGAGAATTGAGGCGAATTCGGTTGTATGATACCGTCAACATTGACACAATATTCTTTGTGATCTCAGAGCTGCAAGAGGTTCCTAATGAGGTTTATCGTCCACCAGTGGAAGTTTACAGGAGCTGTTGTAGACAGATTAAGAAAGGCTATCAGAGAAACAATAGTCCTCGGTATTATATATCTATTCTTGAAGGTGATGGAGATGGAAAACAATCAGAAATTGAAGAACCTCGTGTTGTAGTTCAAATGGACACAGAGAGTCCTGCAATATACCAAAAGTCCTGTTTGGACCATTATTTTGATAAACCTATAAGAGTAACTGGAGATGTACGTGTCATATTCTATGAGAAAATGATTGGAGGTCGTCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAGGAACAGCTTACTACAGCTCACATTAAAGGACTTGGACAAAGTTGGGAAGAAAGGAAGATCAATATGTGGCCCTACATTCTGCTTAGAATTACTATTTGGTCCTGCTAATAATACAGGATATTCATCATCAAATATATCCATGGGTGACAATTCTAGTTATGATTCATTTTAA 987 0.383 MTIVESGALPIVLPFSSPTIMHIIIAKAYQIKNFQVYNLCIEESYDPAHFYGRVETYPFDDNHAGKGRTGLMVCAYLTYCGMSADEALQLYAVRRTTNNEGVSIPSQRRYVGYWESLLSTPRGNGYGSPMVNLPQPCSRELRRIRLYDTVNIDTIFFVISELQEVPNEVYRPPVEVYRSCCRQIKKGYQRNNSPRYYISILEGDGDGKQSEIEEPRVVVQMDTESPAIYQKSCLDHYFDKPIRVTGDVRVIFYEKMIGGRLFYCCFNTAFIRNSLLQLTLKDLDKVGKKGRSICGPTFCLELLFGPANNTGYSSSNISMGDNSSYDSF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00030 328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 214 306 IPR035892 -
Sebi112g00030 328 Gene3D Protein tyrosine phosphatase superfamily 62 121 IPR029021 -
Sebi112g00030 328 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 32 64 - -
Sebi112g00030 328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 25 118 IPR029021 -
Sebi112g00030 328 Gene3D - 173 310 - -
Sebi112g00030 328 SMART PTEN_C2_2 134 306 IPR014020 -
Sebi112g00030 328 Pfam C2 domain of PTEN tumour-suppressor protein 229 304 IPR014020 -
Sebi112g00030 328 ProSiteProfiles C2 tensin-type domain profile. 152 307 IPR014020 -
Sebi112g00030 328 ProSiteProfiles Phosphatase tensin-type domain profile. 1 121 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00030 Sebi-Chr112 606550 609793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00030 33 307 Protein tyrosine phosphatase (PTP) family AT5G39400 62.013 1.62e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00030 K01110 - gmx:100809938 498.434