Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00009 ATGGGTTGTGTCAACTCCAAGAAAGCGGTTGCCGGAGCCGATTCTGCTTCGCCGGCGGGACCTTACGTTCATTCTAGCTCACGGAAAAGGAGCAATGGTTCTGGGCAATGCAGCATTGTTGTGGAGGCACCAGCACCACCAGCAACTGTGGTGGGCTCATCCTCCTCAAGAGCACATTCTGGGGTACTGACCCAACAACAACATTCGGGTCATGACCCGAAACCCGAGGAGTGGAAGAAGGGAAACTTGAGCATGAGGCTTGGTTTGTCACATAGGTTTGTGGAAGCAGAACAGAATGCAGCTGGTTGGCCTTCTTGGCTCACCTCTGTTGCAGGGGAAGCCATTCATGGATGGGTCCCTCTCAAAACAGATTCTTTTGAGAAATTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCAAGCACGTGAAGTTGAAACAGGAAGGATGGTTGCCCTGAAGAAGGTGCGGTTTGACAATTTCCAACCTGAGAGCATTAGCATATACCTTGTATTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCAGACATCAAGTTCAGTGACTCACAGGTACATTTGATGTTACATACTTACATTGTTGTTTCACATTTTCACCAACAGATTAAGTGTTACATGAGACAGCTATTGAGTGGACTTGAGCACTGTCATCTAAGAGGTATCATGCATAGAGACATTAAAGTATCCAATATATTAGTGAACAATGAAGGCATTCTCAAGATAGGAGATTTTGGATTAGCAAATACCATTAACCCAAATAGCAAACACCCTTTAACAAGTCGTGTAGTGACTCTATGGTATCGCCCTCCTGAGCTCTTGATGGGATCAACAAATTATGGAGTTTCAGTGGATCTGTGGAGTATAGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCTATTCTCAAGGGAAGAAATGAGGTGGAACAATTACACAAAATTTTTAAGCTTTGTGGGTCTCCACCTGATGAGTTCTGGAAAAATAATAAGCTTCCCCTTGCAACAATGTTTAAGCCTCAAACTAGTTATGAAAGTTCTCTTAGGGAGAGGTGTAAGGGTTTTCCTGGGACTGCTGTAAGCCTACTTGAGACTTTACTGTCCATTGATCCCCAAAAGCGTGGGACTGCATCCTCTGCACTTATGTCTGAGTATTTCAGCACCAAGCCATATGCTTGTAATCCATCACTCCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAAACCCGGGAAGATATGCGCAGGAAAAAGAATGGAGCTAAAGTGCGAGAGCGAGAGGCTGTAACATCAAGAAGGCAAAGACTAGGCCATAAAGTTCTGCAGGACCCTAACAATGTCAGTAAACCAGCTTTGAAAGAGGAAATGCAGAATGCTTCTCAAAATACTTATAGAGATGATGGTAAAGCACATCATACAAAAGGAAAAGCAGGAGCTATGCACAAAGAGCAACAAAAACCTTTATATGATGCAAAATCAGAGGTTGCCCAAATGATGAATGGTAGTAGTAATGGCTATAGTGTATACTCAGGACCAGCACCAGTCACAGGATCTAGTGGCTTTACATGGGCAAAAAGGAGAAAACCAGATACTTCATCCATACTATCAGATGGCTCAAGAAGCAAGATCAGTGAACTGGATCCAACCTTTGCAAAAGGCACATATGATTTAACAAAACATGGGATACAAGTTTCAGAAAGAAAACATAATTACAACACAAGCCACCAAGATGAGACTTCCCTTCATGTATTGCAAATGCACCAGGCTCATCATGGTCAACGAGAATCATTTGATGTAGATGATGCATACCATTCAAATCATTACATGGAATTTGATCTCTCAGAAAAAACAGATGCTCTCATAAACACTCAGGGCTACAGAAAATATGGTGAGTCTGTGGAACAATCAATACCAACAATGATCCAAACAAATAAAAACGATGAATTGTTGCATTGGAATGAAAATAATATGCGGCAATCTGTTCGTAGATCAAGACAGATGAGTCAAGGATTATTGGAGTGGAGTGATCCCCACCTCTACAAGGGTGCTTGA 2085 0.4249 MGCVNSKKAVAGADSASPAGPYVHSSSRKRSNGSGQCSIVVEAPAPPATVVGSSSSRAHSGVLTQQQHSGHDPKPEEWKKGNLSMRLGLSHRFVEAEQNAAGWPSWLTSVAGEAIHGWVPLKTDSFEKLDKIGQGTYSSVFQAREVETGRMVALKKVRFDNFQPESISIYLVFEYMEHDLAGLVSSPDIKFSDSQVHLMLHTYIVVSHFHQQIKCYMRQLLSGLEHCHLRGIMHRDIKVSNILVNNEGILKIGDFGLANTINPNSKHPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSIGCVFAELFLGKPILKGRNEVEQLHKIFKLCGSPPDEFWKNNKLPLATMFKPQTSYESSLRERCKGFPGTAVSLLETLLSIDPQKRGTASSALMSEYFSTKPYACNPSLLPKYPPSKEMDAKTREDMRRKKNGAKVREREAVTSRRQRLGHKVLQDPNNVSKPALKEEMQNASQNTYRDDGKAHHTKGKAGAMHKEQQKPLYDAKSEVAQMMNGSSNGYSVYSGPAPVTGSSGFTWAKRRKPDTSSILSDGSRSKISELDPTFAKGTYDLTKHGIQVSERKHNYNTSHQDETSLHVLQMHQAHHGQRESFDVDDAYHSNHYMEFDLSEKTDALINTQGYRKYGESVEQSIPTMIQTNKNDELLHWNENNMRQSVRRSRQMSQGLLEWSDPHLYKGA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00009 694 PANTHER CELL DIVISION PROTEIN KINASE 124 400 - -
Sebi112g00009 694 ProSitePatterns Protein kinases ATP-binding region signature. 132 155 IPR017441 GO:0005524
Sebi112g00009 694 Gene3D Transferase(Phosphotransferase) domain 1 209 436 - -
Sebi112g00009 694 ProSiteProfiles Protein kinase domain profile. 126 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00009 694 MobiDBLite consensus disorder prediction 49 69 - -
Sebi112g00009 694 MobiDBLite consensus disorder prediction 1 79 - -
Sebi112g00009 694 MobiDBLite consensus disorder prediction 20 38 - -
Sebi112g00009 694 SMART serkin_6 126 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00009 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Sebi112g00009 694 Gene3D Phosphorylase Kinase; domain 1 113 168 - -
Sebi112g00009 694 SUPERFAMILY Protein kinase-like (PK-like) 119 401 IPR011009 -
Sebi112g00009 694 Pfam Protein kinase domain 162 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00009 694 FunFam probable serine/threonine-protein kinase At1g54610 199 436 - -
Sebi112g00009 694 MobiDBLite consensus disorder prediction 415 450 - -
Sebi112g00009 694 MobiDBLite consensus disorder prediction 407 496 - -
Sebi112g00009 694 MobiDBLite consensus disorder prediction 476 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00009 Sebi-Chr112 328201 333119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00009 118 453 Core Cell Cycle Gene Families AT5G10270 41.099 6.63e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sebi112g00009 Pkinase 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00009 - - lja:Lj1g3v2982400.1 985.326