Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi112g00006 ATGGATGGGCCAGCTGGTCGAGGTGGTGGTGCAGGCCTTGACATGTATCTGCCAAATTATAAATTGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAGGTGAAAATTGCGGAACATGTATTGACTGGTCATAAGGTTGCAATCAAGATTCTTAACCGTCGCAAGATAAAGAACATGGACATGGAAGAAAAAGTAAGAAGAGAAATCAAAATTCTCAGACTGTTCATGCACCCACACATTATAAGACTTTATGAGGTTATCGAAACTCCAACTGACATTTATGTTGTCATGGAGTATGTGAAATCTGGAGAGCTTTTTGATTACATAGTAGAAAAGGGCAGGTTGCAAGAAGATGAAGCTCGTAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGGGATCTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTAAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGGGATGGTCACTTTCTTAAGACAAGTTGTGGAAGCCCCAACTATGCTGCTCCTGAGGTTATCTCTGGAAAATTGTATGCTGGACCTGAAGTAGATGTCTGGAGCTGTGGTGTAATTTTATATGCCCTTCTTTGTGGCACTCTTCCTTTTGACGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGAGGAATATACACTCTTCCTAGTCATCTATCACCTGGTGCTAGAGATTTGATACCGAGAATGCTTGTGGTCGACCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACATGCATGGTTCCAAGCACGTCTTCCGCGTTATTTAGCTGTTCCACCACCAGATACAATGCTACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAATATTGGATTTGACCGGAATCAATTGATCGAATCTCTTCGCTTGTGCCCTTCATTTTTTCCTTGCGATTCCGTGTTTCCAGTGGCAATCTTGGAGCTCAGTTTCAAGAATCCATGGTAG 1029 0.4208 MDGPAGRGGGAGLDMYLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHAWFQARLPRYLAVPPPDTMLQAKKIDEEILQEVVNIGFDRNQLIESLRLCPSFFPCDSVFPVAILELSFKNPW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi112g00006 342 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 19 275 - -
Sebi112g00006 342 Pfam Protein kinase domain 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00006 342 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 293 317 IPR015940 -
Sebi112g00006 342 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Sebi112g00006 342 Gene3D Transferase(Phosphotransferase) domain 1 12 319 - -
Sebi112g00006 342 ProSiteProfiles Protein kinase domain profile. 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi112g00006 342 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Sebi112g00006 342 CDD STKc_AMPK_alpha 17 272 - -
Sebi112g00006 342 FunFam Non-specific serine/threonine protein kinase 14 321 - -
Sebi112g00006 342 FunFam Non-specific serine/threonine protein kinase 13 99 - -
Sebi112g00006 342 SUPERFAMILY Protein kinase-like (PK-like) 17 289 IPR011009 -
Sebi112g00006 342 SMART serkin_6 20 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi112g00006 Sebi-Chr112 242055 307963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi112g00006 20 272 CBL-interacting serine-threonine protein kinases AT4G24400 52.756 2.17e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Sebi112g00006 Pkinase 1.9e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi112g00006 K07198 - gmx:100796687 610.912