Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1121g00002 ATGGGTTCGGTTCCTGCAGAACTGAGCTTGGATTTAAGACCTAGTTTCGTTCCCAAAACCATCGCTGATTTCCTCTACGACCTCTCCACCATCCCTGCTTCCTCCGACAAGCTCTCTAGGCTCCACGATTTCCTCTCCCGATTGGAAGATGAGCTCAGGAAGATCGACGCTTTCAAGCGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGACGCAATTTTAGTTTTGAAGGAGGAATCGGAAAAATGCAGGGCTCATAATTCTCTGCCAGTGTTGGAAGATAATAGAAATGGAGCAAGTGCTTTTATGCCTTTTTCCTCATACCCTTCTGTCCCTGTGACAACAGTGGCACTGGCAACAACCAAAGAAGAGAAGGAAGAAACTGTTATCAATAGACTCTCTCTTCTGACCCCTGGTGTGAAAACTTTGAGGGAGGGATTTGGTGGTTCAAGGGGTTCCAGAACCAGCTCCAATAGGGCAGTTTCTTCCTCTCCTCCTACAGTGCAGCCAAGTTTGCGTGCAGGACCACTTCAGCAGCAGCAACAAACAGCTAGGAAACAGAGAAGATGCTGGTCACCAGAATTGCACCGTCGATTTGTTAATGCATTGCAGAAGCTCGGTGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACAAATGATGAAGTGAAGAGCCATTTGCAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCAAATTCTAATCAATCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCCCAAGATCAATACAATGACTCTTCAAAGGGTAGCAGTTCAGGGTCTGGTTCTCCACAAAGTCCCCTTCATTTAGCAACAGGATCAAGGGGAGGGACATCCCCAACTGAGGGTGAAAGCATGGAAGATGATGAAGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCACATTCAGAAAGCTGGAAAAGTTGATGTATAG 987 0.459 MGSVPAELSLDLRPSFVPKTIADFLYDLSTIPASSDKLSRLHDFLSRLEDELRKIDAFKRELPLCMFLLNDAILVLKEESEKCRAHNSLPVLEDNRNGASAFMPFSSYPSVPVTTVALATTKEEKEETVINRLSLLTPGVKTLREGFGGSRGSRTSSNRAVSSSPPTVQPSLRAGPLQQQQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAANSNQSVVVLGGLWMSQDQYNDSSKGSSSGSGSPQSPLHLATGSRGGTSPTEGESMEDDEDEKSESYSWKSHIQKAGKVDV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1121g00002 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 243 IPR017930 -
Sebi1121g00002 328 MobiDBLite consensus disorder prediction 267 328 - -
Sebi1121g00002 328 Gene3D - 185 243 - -
Sebi1121g00002 328 MobiDBLite consensus disorder prediction 144 191 - -
Sebi1121g00002 328 MobiDBLite consensus disorder prediction 149 188 - -
Sebi1121g00002 328 MobiDBLite consensus disorder prediction 310 328 - -
Sebi1121g00002 328 Pfam Myb-like DNA-binding domain 188 239 IPR001005 -
Sebi1121g00002 328 SUPERFAMILY Homeodomain-like 183 244 IPR009057 -
Sebi1121g00002 328 FunFam Myb family transcription factor 185 243 - -
Sebi1121g00002 328 MobiDBLite consensus disorder prediction 267 298 - -
Sebi1121g00002 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 94 IPR044787 GO:0003700|GO:0006355
Sebi1121g00002 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 241 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1121g00002 Sebi-Chr1121 93656 95794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1121g00002 8 236 G2-like Transcription Factor Family AT4G37180 36.220 2.37e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi1121g00002 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1121g00002 - - mtr:25493035 327.405