Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi111g00098 ATGAGCAAAAGACCACCACCTGATCCTGTGGCAGTGCTACGAGGCCATCGCGCTTCCGTCATGGACATTTCTTTTCATCCCTCTAAACCCATACTATTCTCAGGTTCTGCTGATGGTGAACTGCGGATTTGGGATACCCTTCGGTATCAAACACTGTCATCTGCGTGGTTACATAGTGCGGCCCATGGAATTGTTTCTGTTTCCAGTAGTTCTTCTCTTGGAACCAATAAGTTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGATTTTGGTGATGCTGGTTTGTCCAGGATTCCATCACTTACAATCAAGACAAACACTTACCACTTTTGCAAACTTTCCACGGTGAAGAATCATTGTCCTTTGTTGAAAGAAGGGACAGCGTCAAAAAATTGCCATAGAACAGAGGTAGAAGGAATGTCAGATAGAGAAAATCATGAGGTTAAGAGAGAAGAGGCTTATACCAATCAAAGTTGTTCTGAAAGCATTGAAGAAAATACGTATAATGAAGGGCTACCATACGTGGCTTTGTCAGGGGAGAACTCTTCTGAGGTTGAAATTTTGGATCTCAAGTCAGGTGAAAAATCTGTGCGACTCCCTACAAACAGCCCTAGTAACTCTTCAAGTGCTTGCAACAAAGATAGAGGGATGTGCATGGCGCTTCAATTATTTTTACCATCTGAATCGCAAGGATTTTTAAATGTCTTGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCTGGTGTTCCGGCTAGTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCATCTGTATTGATGGGTCTTGCAAAGGGGGTATCTCTGGAGCTGCAGATGAGAAGATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTAAACAAAGAAATCAAATTGGAGCGACCAGGCATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGATGGGACCACAGAGTAAGGGTATATAATTACCGCAAAGGAAATGCTTTAGCTATACTAAAGTATCATCATGCCACGTGCAATGCTGTAACTTTTTCGTCCAATTGTAAGCTTATGGCCACTGCGTCGGAAGACACAATGGTGGCGCTATGGGAATTGTATCCTCCTCAAATATGA 1164 0.4356 MSKRPPPDPVAVLRGHRASVMDISFHPSKPILFSGSADGELRIWDTLRYQTLSSAWLHSAAHGIVSVSSSSSLGTNKFVSQGRDGTVKVWDFGDAGLSRIPSLTIKTNTYHFCKLSTVKNHCPLLKEGTASKNCHRTEVEGMSDRENHEVKREEAYTNQSCSESIEENTYNEGLPYVALSGENSSEVEILDLKSGEKSVRLPTNSPSNSSSACNKDRGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPASSVKFHSEPVLSICIDGSCKGGISGAADEKIVMYSLDHSSGTCVVNKEIKLERPGISGTSIRPDGKIAATAGWDHRVRVYNYRKGNALAILKYHHATCNAVTFSSNCKLMATASEDTMVALWELYPPQI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi111g00098 387 PANTHER TRANSDUCIN BETA-LIKE 3 4 382 - -
Sebi111g00098 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Sebi111g00098 387 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Sebi111g00098 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Sebi111g00098 387 Gene3D - 4 106 IPR015943 GO:0005515
Sebi111g00098 387 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Sebi111g00098 387 PRINTS G protein beta WD-40 repeat signature 368 382 IPR020472 -
Sebi111g00098 387 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Sebi111g00098 387 SMART WD40_4 50 91 IPR001680 GO:0005515
Sebi111g00098 387 SMART WD40_4 6 45 IPR001680 GO:0005515
Sebi111g00098 387 SMART WD40_4 342 381 IPR001680 GO:0005515
Sebi111g00098 387 SMART WD40_4 300 339 IPR001680 GO:0005515
Sebi111g00098 387 SMART WD40_4 254 293 IPR001680 GO:0005515
Sebi111g00098 387 Gene3D - 107 386 IPR015943 GO:0005515
Sebi111g00098 387 SUPERFAMILY WD40 repeat-like 4 381 IPR036322 GO:0005515
Sebi111g00098 387 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 387 - -
Sebi111g00098 387 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 387 IPR001680 GO:0005515
Sebi111g00098 387 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi111g00098 Sebi-Chr111 1705908 1714633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi111g00098 237 382 U-box Gene Family AT2G33340 27.333 7.71e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi111g00098 K24770 - gmx:100800482 638.262