Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi111g00059 ATGTCGACTTCGGGCGAGGATCAACCCCATCCCCCTCACTTATCTCAATTCAAATTCGACCTATTGCATCCTTCTTCCCACTCTCACTTTCATCACAATCCTCCTCTTCCTCTTCCCCATTCCCATTCTCCTTTTCCTATTCTCCCTGTGACTTTGAATCAAAGATATGAAATCAATAATTTCAAGTCTCACACAAGTAATATCGAAGTAGTTCCTAGTCCGAGCAAAACAGTCAATCTTCCTCCTCCACTTCAAACGGAGCTTAGCCAAAGAGGAAAGCATCATGGTAAAACAAAAGTTCCAAGAAATGCAAAATCTGGGACTAACAGATCAAATGCCGAATCTCCAAATCCTACTGCAGGTAACAACTGTCGTTATGACAGTTCCTTAGGATTATTGACCAAGAAATTTGTCAGCTTGATCCTGGATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATTTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGATGATCAAGTTAATAATATAAAGGCTGAAGTTGCGAGTCTATATGCTGAGGAATGCAAACTTGACGATTGTATAAGGGAAAAGCAGGAGCTTCTAAGAAGCCTGGAGAAGACAGAAAACTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTTCCCTTCCGTGCTTCCAGAATCAAGAACTTATTGCAATCAGGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCTGACGAGGAATTTGGTTTCCGGCAAAGACAGTACAAAATGACTGTCAGAAGTGCAACTGGACCTATAACTTTGTACCTCTTAAGCAAGCCCGACCGCAAGTTTGAGGATTACAGTGTCAAGCAGGTGAAATTAATAAATCCATCGTGGAATAATGACCACTGCAGAATGGATGGTGTGGGATTATTAGAAAACCCAGATGATCAGAAAAAGCCTTCTGAGAGTTTCGGTTCGCTAGGCTCAGAGGCATTTGGATTCCAAGAAATTACTCCTATGGATTTTGAAAGCAATGATGACTATTGGTTTCAATCAGATCCTGGACCAAGCCTAACAGAATTGTGGGGTAGCAATATTTCTAACTAA 1194 0.4095 MSTSGEDQPHPPHLSQFKFDLLHPSSHSHFHHNPPLPLPHSHSPFPILPVTLNQRYEINNFKSHTSNIEVVPSPSKTVNLPPPLQTELSQRGKHHGKTKVPRNAKSGTNRSNAESPNPTAGNNCRYDSSLGLLTKKFVSLILDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELDDQVNNIKAEVASLYAEECKLDDCIREKQELLRSLEKTENSQKYLFLTKEDILSLPCFQNQELIAIRAPKASFIEVPDPDEEFGFRQRQYKMTVRSATGPITLYLLSKPDRKFEDYSVKQVKLINPSWNNDHCRMDGVGLLENPDDQKKPSESFGSLGSEAFGFQEITPMDFESNDDYWFQSDPGPSLTELWGSNISN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi111g00059 397 CDD E2F_DD 201 307 IPR032198 GO:0046983
Sebi111g00059 397 MobiDBLite consensus disorder prediction 67 124 - -
Sebi111g00059 397 Gene3D - 119 192 IPR036388 -
Sebi111g00059 397 MobiDBLite consensus disorder prediction 102 124 - -
Sebi111g00059 397 Pfam E2F transcription factor CC-MB domain 207 305 IPR032198 GO:0046983
Sebi111g00059 397 FunFam E2F transcription factor 1 119 192 - -
Sebi111g00059 397 SMART E2F_TDP_2 125 190 IPR003316 GO:0005667|GO:0006355
Sebi111g00059 397 SUPERFAMILY "Winged helix" DNA-binding domain 125 188 IPR036390 -
Sebi111g00059 397 PANTHER TRANSCRIPTION FACTOR E2F 75 391 IPR015633 GO:0000978|GO:0006357
Sebi111g00059 397 Pfam E2F/DP family winged-helix DNA-binding domain 127 190 IPR003316 GO:0005667|GO:0006355
Sebi111g00059 397 Coils Coil 220 240 - -
Sebi111g00059 397 MobiDBLite consensus disorder prediction 67 86 - -
Sebi111g00059 397 SUPERFAMILY E2F-DP heterodimerization region 201 307 IPR037241 -
Sebi111g00059 397 Gene3D - 197 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi111g00059 Sebi-Chr111 1050707 1054654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi111g00059 93 391 E2F-DP Transcription Factor Family AT1G47870 52.649 1.82e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi111g00059 E2F_CC-MB 7.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi111g00059 K06620 - gmx:100797301 521.931