Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1113g00004 ATGAGTTTCAGAGACAGGAACATAGGAGGAGAAGAGAGGGAATGTGAAGAATCGGTGTTAGGAAGCACTGAATCCAAATCAGTGAGACAAAATGGGTCGTTAACAACCACGCAGCTAACAATTGATGAGAGTCTTCTGGTTGACCCCAAACTGCTCTTTATTGGCTCCAAGATTGGTGAGGGAGCTCACGGGAAAGTTTATGAAGGAAGGTATGGAGATAGAATTGTTGCAATCAAAGTGCTGAATCGTGGGAGCACTTCAGAAGAAAGAGCTGCCCTTGAAAATCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCACCATGACAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTCTTATGGTGATAGTTACAGAGTTATTGCCAGGGATGTCACTAAGAAAATATTTGATGAATGTACGTCCTAAACTACTAGACCTTCACGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTACATGCCAATGGGATCATTCATAGAGATCTGAAACCCGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCTGTTACTGAAATGATGACCGCAGAAACAGGAACTTACCGATGGATGGCACCAGAGTTGTACAGTACTGTAACATTGCGCCAGGGAGAGAAAAAACACTATAACAATAAGGTTGATGTGTATAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTTGAAGGGATGTCCAATTTACAAGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAGTCTTCCAGATGATATATCCCCTGATCTTGCTTATGTCATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCAAGCTTTAGTCAGATCATCCGGATGCTCAACGCGTTTCTCTTCACACTCTCACCACCATCTCCTCCTTTGCCAGAACCTGACAGTGATCCTGAGGCAGTAGCAACAACAAGTAATGGTACCATTACTGAGTGTTCTGCCCGAAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTGTTTTCTTCAAAAAGGATAAAAAACTAA 1113 0.4232 MSFRDRNIGGEERECEESVLGSTESKSVRQNGSLTTTQLTIDESLLVDPKLLFIGSKIGEGAHGKVYEGRYGDRIVAIKVLNRGSTSEERAALENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMNVRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSLPDDISPDLAYVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPEPDSDPEAVATTSNGTITECSARNKGKFAFLRQLFSSKRIKN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1113g00004 370 MobiDBLite consensus disorder prediction 1 20 - -
Sebi1113g00004 370 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Sebi1113g00004 370 PRINTS Tyrosine kinase catalytic domain signature 240 262 IPR001245 GO:0004672|GO:0006468
Sebi1113g00004 370 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Sebi1113g00004 370 PRINTS Tyrosine kinase catalytic domain signature 128 141 IPR001245 GO:0004672|GO:0006468
Sebi1113g00004 370 SUPERFAMILY Protein kinase-like (PK-like) 50 336 IPR011009 -
Sebi1113g00004 370 FunFam Kinase suppressor of Ras 1 41 131 - -
Sebi1113g00004 370 CDD STKc_MAP3K-like 58 313 - -
Sebi1113g00004 370 Gene3D Phosphorylase Kinase; domain 1 40 131 - -
Sebi1113g00004 370 SMART serkin_6 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1113g00004 370 MobiDBLite consensus disorder prediction 1 31 - -
Sebi1113g00004 370 Pfam Protein tyrosine and serine/threonine kinase 54 313 IPR001245 GO:0004672|GO:0006468
Sebi1113g00004 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Sebi1113g00004 370 ProSitePatterns Protein kinases ATP-binding region signature. 58 79 IPR017441 GO:0005524
Sebi1113g00004 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 314 - -
Sebi1113g00004 370 Gene3D Transferase(Phosphotransferase) domain 1 134 322 - -
Sebi1113g00004 370 ProSiteProfiles Protein kinase domain profile. 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1113g00004 Sebi-Chr1113 27726 31055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1113g00004 40 367 MAP Kinase Kinase Kinase AT5G01850 74.221 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi1113g00004 PK_Tyr_Ser-Thr 1.2e-60 CL0016