Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1110g00002 ATGGAAGTTGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATCAACTGAATCAGCCACTGCTGAAGAGGAATAGGACACTGTCTTCAAATCCACTTGCTCTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGACTATGAGATAAATGAGAATGATCTGTTCAAGCATAATTGGAGGACCAGATCAAGAGTTGAAGTATTGCAATACATATTCTTGAAATGGACACTGGCATTCCTTGTTGGATTTCTCACTGGTATTATAGCAACTCTCATCAATCTTGCTGTTGAGAACATTGCAGGGTACAAGCTTCTTGCTGTTCTTAAATACATCCACAGAGAAAGGTACTTGACGGGTTTCCTATATTTCACGGGCATCAATTGTGTTTTAACATTAGTTGCTGCTGTTCTGTGTGTGTGTTTTGCACCCACAGCAGCTGGACCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACGCCCAATATGTATGGTGCTACAACATTGATAGTCAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCTTAGATCTAGGAAAAGAAGGACCCTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGACAGGGAGGCCCTGACAATCACAGGATCAAATGGCGATGGCTTCGATATTTTAACAATGATCGTGACCGTCGAGATCTTATTACCTGTGGTGCATCTTCTGGAGTTTGTGCAGCTTTCCGGGCACCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAACTTGGTGGAGAAGTGCTCTCCTATGGAGAACATTTTTTAGCACAGCTGTGGTGGTGGTGGTGCTCAGGGCCTTCATTGAAATTTGCAACTCTGGGAAATGTGGTCTTTTTGGTGCAGGAGGGCTGATCATGTTTGATGTGAGCAATGTCACTGTTAGGTACCATGTGATGGATATCATCCCTGTGGTAGTCATTGGAATCATTGGCGGGGTATTGGGAAGCCTTTATAATCATCTTCTGCACAAGGTTCTCAGACTCTACAATCTCATCAACCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTTGTACTCTTCACGTCAGCATGTCAATATGGTCTCCCATTCCTAGCAAAATGCACCCCTTGTGATTCATTGCTTCCAGAGTCAAAGTCTGCCTGTCCAACCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCTACTACAATGATCTTGCTACTCTGCTGCTTACCACTATTGATGATTCTGTTCGAAACATATTCTCAACCAACACTCCTCACGAATATCAACCCTCCTCCCTCCTAATTTTCTTTGCACTCTACTGCATATTAGGACTGTTCACTTTTGGAATTGCTGTGCCATCTGGGCTCTTCCTCCCAATCATCCTTATGGGCTCAGCTTATGGTCGTCTTCTTGGCATGTTCATGGGACCTCATACAAACATTGACCAAGGGTTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGAATGACTGTATCCCTTTGTGTGATCTTCCTTGAGCTCACCAGCAACCTTCTCCTGCTACCAATAACGATGATTGTTCTCCTAATAGCTAAAACTGTTGGAGATTGTTTCAACCCAAGCATCTATGAAATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCATGGATGAGAAATCTCACTGTGGGTGAACTCGTTGATGTAAAGCCAGCTGTGGTTTCCCTCCATGGAGTAGAAAAGGTAGCCAATATAGTAAATGTCTTGAAAAACACTACACATAATGGTTTCCCTGTGATGGATGATGGGGTGGTACCACCGGTAGGACAGGCCAATGAGGCAACAGAATTGCATGGACTAATTCTAAGAGCACACCTCATCCAAGCATTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGCGTTTGAAGAGGTGGCTATAACAAGTGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTCACCAATACAACTCCCTTTACAGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGGTCCTCTTCAGGCAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAGGCATCGGGGGTATCCCCTGTAATTGGGATCTTGACCAGACAGGATCTACTGGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGGGCAGAGAGAAGAGAAATTGA 2322 0.4397 MEVVEREEEIDPESNQLNQPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHNWRTRSRVEVLQYIFLKWTLAFLVGFLTGIIATLINLAVENIAGYKLLAVLKYIHRERYLTGFLYFTGINCVLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVRYHVMDIIPVVVIGIIGGVLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSACQYGLPFLAKCTPCDSLLPESKSACPTNGRSGNFKQFNCPPGYYNDLATLLLTTIDDSVRNIFSTNTPHEYQPSSLLIFFALYCILGLFTFGIAVPSGLFLPIILMGSAYGRLLGMFMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSLHGVEKVANIVNVLKNTTHNGFPVMDDGVVPPVGQANEATELHGLILRAHLIQALKKKWFLKERRRTEEWEVREKFTWVELAEREAFEEVAITSEEMEMFVDLHPLTNTTPFTVLESISVAKAMVLFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAKSKGREKRN 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1110g00002 773 Gene3D Clc chloride channel 67 570 - -
Sebi1110g00002 773 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 758 - -
Sebi1110g00002 773 SMART cbs_1 703 756 IPR000644 -
Sebi1110g00002 773 SMART cbs_1 590 649 IPR000644 -
Sebi1110g00002 773 Pfam CBS domain 702 752 IPR000644 -
Sebi1110g00002 773 SUPERFAMILY CBS-domain pair 572 753 IPR046342 -
Sebi1110g00002 773 CDD ClC_6_like 44 568 - -
Sebi1110g00002 773 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi1110g00002 773 PRINTS Plant CLC chloride channel signature 49 57 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi1110g00002 773 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi1110g00002 773 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi1110g00002 773 PRINTS Plant CLC chloride channel signature 419 435 IPR002251 GO:0005247|GO:0006821|GO:0016020
Sebi1110g00002 773 FunFam Chloride channel ClC3 67 387 - -
Sebi1110g00002 773 CDD CBS_pair_voltage-gated_CLC_euk_bac 588 754 - -
Sebi1110g00002 773 SUPERFAMILY Clc chloride channel 53 570 IPR014743 -
Sebi1110g00002 773 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 517 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 499 515 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 555 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 PRINTS Chloride channel signature 467 487 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 Pfam Voltage gated chloride channel 132 548 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Sebi1110g00002 773 FunFam Chloride channel protein 569 755 - -
Sebi1110g00002 773 Gene3D - 571 759 IPR046342 -
Sebi1110g00002 773 ProSiteProfiles CBS domain profile. 700 766 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1110g00002 Sebi-Chr1110 11276 15348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1110g00002 8 768 Ion Channels AT3G27170 81.365 0.0 1260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1110g00002 K05016 - gmx:100788620 1389.4