Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00142 ATGGAAAACGTTTCAGTTTTATCTAAGCCAGAGGATAAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTATACAAGAAGGGAAAGCAAAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGGTTGAGAACAAACAGAGCCACAGAAGCAGGGTATTGGAAGGCAACAGGAAAAGACAAGGAGATTTTCAGAGGAAAATCACTTGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGGGAGAGCACCCCAAAGGAAGAGAAAAGCAACTGGGTGATGCATGAATATAGACTTGAGGGTAAATTCTCAGTTCATAATCTACCTAAAACTGCAAAGAATGAATGGGTTATTTGCAGGGTGTTTCAGAAGAGTTTAGCTGGCAAGAAAACCCATATTTCTGGGATAATGAGATTGGACTCAATAGGAAATGAATTGGGTCCTTCTGGTCTACCACCCCTCACAGATTCATTGCCTTCCATTGCCAAAACCAAATCACTGATTGATTCAGCTTACGACCAGTCCATCCTAAGAGCCTTGTATGAGAACAATGGATCAAACTTGATAAATGGTTTCAAGACAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAGATTTAACCACTGATATGAATGTAGAAACCTCTTCAGTGGTATCAAATTTTGATATGGGTAGGAGCCACTTTGACAATCAGAATCATCCTCATGCTTCTGTTGCAGCAGTGGACCTTGATGATTTTATCTAA 801 0.402 MENVSVLSKPEDKMDLPPGFRFHPTDEELISHYLYKKGKQKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGESTPKEEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSLAGKKTHISGIMRLDSIGNELGPSGLPPLTDSLPSIAKTKSLIDSAYDQSILRALYENNGSNLINGFKTEREMVSVSQETDLTTDMNVETSSVVSNFDMGRSHFDNQNHPHASVAAVDLDDFI 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00142 266 Gene3D NAC domain 37 145 IPR036093 GO:0003677|GO:0006355
Sebi110g00142 266 Pfam No apical meristem (NAM) protein 17 41 IPR003441 GO:0003677|GO:0006355
Sebi110g00142 266 Pfam No apical meristem (NAM) protein 39 117 IPR003441 GO:0003677|GO:0006355
Sebi110g00142 266 ProSiteProfiles NAC domain profile. 1 142 IPR003441 GO:0003677|GO:0006355
Sebi110g00142 266 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 38 - -
Sebi110g00142 266 SUPERFAMILY NAC domain 12 142 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00142 Sebi-Chr110 1798639 1800082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00142 14 265 NAC Transcription Factor Family AT5G07680 49.848 5.91e-93 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi110g00142 NAM 6.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00142 - - cpap:110810112 345.895