Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00120 ATGGATGGGTTGTTTGCTAGGCTCAGAGAGTTTTCTGTTGCTGAGAACCATCTCACTGGGACCATTCCTTCTGAGGCTTTTCCATGGAATTGTAGCCTTGAAGAACTAGACCTTTCTCAAAATGGGTTTGTTGGTGAGGCACCAAAGGAGGTTGCTAACTGCAAGAATTTAAGCATTCTCAATCTTTCTAGCAACAATTTTACTGGGGCCATTCCCATTGAAATTGGATCCATTTCTGGCCTCAGAGGATTGTACTTGGGAAGCAACAACTTTTCAAGAAATATTCCAGAGTCCCTTCTGAACTTGACCAATTTGGTTTTCTTGGATTTAAGCAGAAACAGATTTGGTAGGGACATACAAGAGATATTTGGGAAATTTAAGCAGGTGAGGTTTCTTCTATTGCACTCCAATTCTTACACTGGAGGATTGATATCTTCAGGAATTCTCACATTGCCAAACATTGTGAGGTTAGACCTAAGCTTCAACAACTTTTCAGATAATTCGTTAACTGGAAGAATCCCCCCAGAGTTGGGAAACTGTTCAAGCTTGTTATGGAAAGATGATGGAATGGTTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGGCATCTTAACAAGGAAAAATTGTAGAGGCCTTTGGGATAAGTTACTCAAAGGATATGGTATTTTCCCATTTTGCACACCTGGGTCCTCCTTTCGCTTACCCCTAATATCCGGGTATATTCAGTTAAGTGGGAACCAGCTAGGTGGTGAAATCCCTTTAGAGATAGGGAAAATGGTGAACTTCAGTATGTTTCACTTGGGGTTCAACAATTTCTCTGGGAAATTCCCTCCAGAGTTGGGAAGTATTCCACTTGTGGTCTTGAACATGACTAGAAACAAGTTTTCAGGTGAAATTCCACAGGAAATTGGAAACATGAAATGTATGCAGAATCTGGATTTGTCTTACAACAATTTCTCTGGGACTTTTCCTACAAGTTTGAACAACTTGGCTGAGCTTAACAAGTTCAACATCTCCTACAATCCCCTCATAGCTGGTGTAGTCCCATCAACAGGACAATTTGTTACTTTTGAGAAGGATTCATATTTAGGTGACCCCCTCTTAATCCTTCCCAAGTTCATTGACAACACCACAAATGATAAAAACACAACCTTTCACAAAGCCCAGAAAAAGCCCACAAAATTGTCTGTGTTCTTGGTGTTTGTAGCCATAACACTAGTTTTCATGGTATTTGGGCTTCTTACCATAATAGTCTGTGTATTGGTAAAAAGCCCATCAGATGAACCAGGATACCTCTTGAAAGACACAAAAGAATGGCATGATTCCAGCAGCACCGGATCCTCACCATGGTTATCTGATACAGTTAAAGTTATCCGCTTGAACAAGACAGCTTTTACATATGCTGACATTTTGAAAGCAACCAGCAACTTCTCAGAGAGCAGAATTATAGGAAAAGGTGGATTTGGAACAGTGTACAAAGGAGTGTTCCCAGATGGTAAAGAATTGGCAGTGAAGAAGCTTCAAAGGGAAGGACTTGAGGGTGAAAAGGAATTCAGAGCTGAAATGGAGGTTCTTAGTGGTCATGGGTTTGGTTGGCCTCATCCAAACTTGGTCACACTCTATGGTTGGTGCCTAAATGGTTCAGAGAAGATACTTGTTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATTTACTGACAGATAGGACACGTTTGACATGGAGGAGAAGGCTACAAGTAGCAATTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAATGCTACCCTTCTATTGTGCACAGAGATGTAAAGGCTAGCAATGTTCTGTTAGACAAAGAAGGGAAGGCCAAAGTAACAGACTTTGGACTTGCTAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACAATGGTGGCTGGGACAGTGGGTTATGTTGCACCTGAATATGGACAAACATGGCAAGCAACTACAAAAGGAGATGTTTACAGTTTTGGGGTATTGATTATGGAGTTAGCAACAGGGAGGCATGCAGTGGATGGAGGAGAAGAGTGTTTGGTTGAATGGGCTAGGCGTGTCATGGGTTATGGAAGACATCATGGGTTAAGCCGTTCTATACCAGTTTTGTTAATGGGTTCTGGGCTAGTTGGTGGGGCTGAAGAGATGGGTGAATTGCTAAGAATTGGGGTGAGGTGCACTTCTGAAGTACCACATGCTAGGCCTAATATGAAGGAGGTTCTGGCTATGCTGATTAAGATATCTAACCCCAAAGGGGACTCAAGTTATGGACACCTTGTTTAG 2343 0.4208 MDGLFARLREFSVAENHLTGTIPSEAFPWNCSLEELDLSQNGFVGEAPKEVANCKNLSILNLSSNNFTGAIPIEIGSISGLRGLYLGSNNFSRNIPESLLNLTNLVFLDLSRNRFGRDIQEIFGKFKQVRFLLLHSNSYTGGLISSGILTLPNIVRLDLSFNNFSDNSLTGRIPPELGNCSSLLWKDDGMVAGSGECLAMKRWIPADYPPFSFVYGILTRKNCRGLWDKLLKGYGIFPFCTPGSSFRLPLISGYIQLSGNQLGGEIPLEIGKMVNFSMFHLGFNNFSGKFPPELGSIPLVVLNMTRNKFSGEIPQEIGNMKCMQNLDLSYNNFSGTFPTSLNNLAELNKFNISYNPLIAGVVPSTGQFVTFEKDSYLGDPLLILPKFIDNTTNDKNTTFHKAQKKPTKLSVFLVFVAITLVFMVFGLLTIIVCVLVKSPSDEPGYLLKDTKEWHDSSSTGSSPWLSDTVKVIRLNKTAFTYADILKATSNFSESRIIGKGGFGTVYKGVFPDGKELAVKKLQREGLEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILVYEYIEGGSLEDLLTDRTRLTWRRRLQVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLIMELATGRHAVDGGEECLVEWARRVMGYGRHHGLSRSIPVLLMGSGLVGGAEEMGELLRIGVRCTSEVPHARPNMKEVLAMLIKISNPKGDSSYGHLV 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00120 780 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Sebi110g00120 780 FunFam serine/threonine-protein kinase BRI1-like 2 450 570 - -
Sebi110g00120 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Sebi110g00120 780 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 164 769 - -
Sebi110g00120 780 SUPERFAMILY RNI-like 7 356 - -
Sebi110g00120 780 Gene3D Ribonuclease Inhibitor 247 400 IPR032675 -
Sebi110g00120 780 Gene3D Phosphorylase Kinase; domain 1 457 570 - -
Sebi110g00120 780 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 269 362 - -
Sebi110g00120 780 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 26 119 - -
Sebi110g00120 780 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Sebi110g00120 780 SMART serkin_6 491 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00120 780 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 571 772 - -
Sebi110g00120 780 ProSiteProfiles Protein kinase domain profile. 491 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00120 780 Pfam Protein kinase domain 492 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00120 780 CDD STKc_IRAK 497 767 - -
Sebi110g00120 780 Gene3D Ribonuclease Inhibitor 1 194 IPR032675 -
Sebi110g00120 780 SUPERFAMILY Protein kinase-like (PK-like) 473 766 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00120 Sebi-Chr110 1581749 1584383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00120 6 767 Receptor kinase-like Gene Family AT5G07280 35.687 2.43e-115 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Sebi110g00120 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00120 - - gmx:100783886 1098.96