Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00066 ATGTCGTCTTCTACAACCTCTTCCAGGCACCATACCTATAATCGAAAGCAGAAATCTCTCGGCCTCTTGTGTACCAATTTCTTGAGCTTGTATAACAAAGACGGAATCCACTTGATCGGTCTCGACGACGCCGCTTCACGATTAGGGGTTGAACGGCGCCGGATCTATGATATAGTTAATGTCTTGGAGAGTGTTGGTGTCAGTGTGCTTGCTAGGAGAGCTAAGAATCAATACACTTGGAAAGGATTTGCGGCCATTCCCGGAGCTTTACAGGACCTCAAGGCTGAGGGTTTGAGGGAGAATTCCACTACTTTCGATGTTGCCAATGACAGTGCAAAAATGTCTGATGATGAGGATGATGCAGAAGCAATATCCAATCCCAGTACTGAAAGTCAGAATGACAAGCCGAATGCTGATTGTGCCAATATTGTCAAATCTTCGAAGAATGAAAACAGAAGGGAAAAGTCTCTTGCACTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATCTCCCTTGACGAAGCTGCAAAATTGTTGCTGGGAAATGCCCATAACACATCAATCATGAGAACAAAAGTCAGACGCCTATATGATATTGCAAATGTTCTATCCTCCATGAACCTAATTGAGAAGACCCATACAGTAGACACAAGAAAACCAGCATTCAGGTGGTTGGGTTTGAAAGGGAAGACATGGAGCGACTCGGTTGACTCAGATCACAATTCAAATGTCAACGAGTCAAGGAAAAGGATGTTTGGAAATGACGTCACAAACATAAGTTTTAAGAGGAATAAAGTTGATTCGTCCATGGATGGGGGATTTTACAAGAACTCTAATATGCAAAATAAACAGGAAAATCATAGTTGTCGGGCCCAACCAGGGACAAGCGACTCAAAACAAGATGCAAAACAGACTTCAAGTTGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGTGCCCAAAGTTGGAGCCTCTGATAATGTTAAGCAGGCACATGATTGGGAGAGTCTCGCAGCTGCCCATTGTCCTCAGTATCAAAATCAAGCTTTAAAAGACCTCTTCTCTCACTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTCGCTGGGAAGAGGCCAATAAAGATTTTGTAA 1152 0.4288 MSSSTTSSRHHTYNRKQKSLGLLCTNFLSLYNKDGIHLIGLDDAASRLGVERRRIYDIVNVLESVGVSVLARRAKNQYTWKGFAAIPGALQDLKAEGLRENSTTFDVANDSAKMSDDEDDAEAISNPSTESQNDKPNADCANIVKSSKNENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTVDTRKPAFRWLGLKGKTWSDSVDSDHNSNVNESRKRMFGNDVTNISFKRNKVDSSMDGGFYKNSNMQNKQENHSCRAQPGTSDSKQDAKQTSSCYQFGPFAPAYVPKVGASDNVKQAHDWESLAAAHCPQYQNQALKDLFSHYMEAWKSWYSEVAGKRPIKIL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00066 383 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Sebi110g00066 383 SMART E2F_TDP_2 15 82 IPR003316 GO:0005667|GO:0006355
Sebi110g00066 383 PANTHER TRANSCRIPTION FACTOR E2F 5 351 IPR015633 GO:0000978|GO:0006357
Sebi110g00066 383 MobiDBLite consensus disorder prediction 106 140 - -
Sebi110g00066 383 SUPERFAMILY "Winged helix" DNA-binding domain 14 80 IPR036390 -
Sebi110g00066 383 Pfam E2F/DP family winged-helix DNA-binding domain 16 82 IPR003316 GO:0005667|GO:0006355
Sebi110g00066 383 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Sebi110g00066 383 Gene3D - 10 84 IPR036388 -
Sebi110g00066 383 Gene3D - 146 234 IPR036388 -
Sebi110g00066 383 MobiDBLite consensus disorder prediction 125 140 - -
Sebi110g00066 383 FunFam E2F transcription factor-like E2FE 147 234 - -
Sebi110g00066 383 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Sebi110g00066 383 MobiDBLite consensus disorder prediction 276 309 - -
Sebi110g00066 383 FunFam E2F transcription factor 8 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00066 Sebi-Chr110 876537 883183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00066 10 380 E2F-DP Transcription Factor Family AT3G48160 58.115 5.28e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi110g00066 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00066 K09391 - qsa:O6P43_030916 525.783