Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00058 ATGGCAGCCGCCGGCGATGTTCTCAGGCAGAGTTTCCCGGAAGTGAGTTCCGGGGAACTGCACGTGCTTGCTGTTGATGACAGCCACGTGGACCGTAAGGTCATTGAACGGTTGCTCAAAATCTCATCTTGCAAAGTGACGGTGGTAGAGAGTGGAACCAGAGCTCTACAGTATCTGGGGTTGGATGGGGACAAAAGCTCCATTGATATTGATACTGTGAAGGTTAATCTGATAATGACAGATTATTCCATGCCAGGGATGACTGGATATGAACTACTCAAAAGGATAAAGCAGGAGTCATCTGTTTTCAGAGAAATTCCGGTGGTGGTTATGTCCTCTGAGAATATCTTGACCCGAATTGATAGTTGCTTGGAGGAAGGAGCAGAGGAGTTTCTGTTGAAGCCTGTAAAGTTGTCTGATGTAAAAAGGTTAACAAATTTCATCATGAGAGGTGAAGGAAAGAAGGGAGAAAAAAAGATCTCAAAAAAGAAGCCGATCAGAGGATTGCAATCCATCTCTATCATCATTTTCCTCAAAGAAGTCAAGATTGTGACCAGAGATTGA 564 0.4415 MAAAGDVLRQSFPEVSSGELHVLAVDDSHVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGDKSSIDIDTVKVNLIMTDYSMPGMTGYELLKRIKQESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTNFIMRGEGKKGEKKISKKKPIRGLQSISIIIFLKEVKIVTRD 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00058 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 154 IPR045279 GO:0009736
Sebi110g00058 187 CDD REC_typeA_ARR 22 144 - -
Sebi110g00058 187 SMART REC_2 20 145 IPR001789 GO:0000160
Sebi110g00058 187 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
Sebi110g00058 187 SUPERFAMILY CheY-like 19 150 IPR011006 -
Sebi110g00058 187 Gene3D - 20 168 - -
Sebi110g00058 187 ProSiteProfiles Response regulatory domain profile. 21 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00058 Sebi-Chr110 802697 804869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00058 3 170 Response Regulator Gene Family AT1G19050 66.474 6.49e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi110g00058 Response_reg 4.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00058 K14492 - gmx:100306152 256.914