Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00039 ATGGCGGGAAATCCCTCAACACCGGATCCCTCTTCGCCAACGTCTCCCCCTGCTAGTTTCAACACGGACCAGCTTCCTCACACCCACACCAGCCGTGCCTCTGAAGGCGATGAAGCCTCCGTTAATCCTGACATCATACGAGACGAAGAACAACCCGACGAAGATGAAGAAGGGGAGGATCTTTTCAATGAGCGCTTCATGGATGATTATAGAGGGATGGAGGAAGCTGACCAGGCTGCAGAGGTGGAGCTCGACAACCGTGATGGTCGCGTTTCCAATCGCAACAAACTTCCTCAGCTTCTGCACGACCAGGATGATGACAGTTATAGGCCTTCTAAAAGGGCTCGAGCTGATTTCAGGCCTCCAGTTCCAAGCGATGACGATCTTGATGGGATGCAAAGTTCACCTGGAAGGTCAGAACGAGGACACTCAAGAGAAGATGTTCCAATGACTGATCAAACTGAGGATGATCGATATGAGGATGAATATGATGATGAAGGTGGGTACCGGATGTACCATGTTCAAGGTACACTCAGAGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCCAGAAATTCAAGGATTTCTTGCTCACATATGTCAATCCGAAAAATGAACATGGTCAATTTGAATATGTGCGCCTGATAAATGAGATGGTGTCAGCTAACAAGTGTAGTTTGGAGATTGATTACAAACAATTTATCTATCTCCATCGCAACATTGCCTTATGGCTGGCTCATGCACCTCAGTCTGTTTTAGAAGCAGATCCACTTAAATACAATGATCCGAATTGGGGGAGTAGTAACCAGAATTCCTATTCAGAGGTTAAAGTTGGATCCTGTTTCGAGTGTCAATCAAAAGGACCATTCACTGTCAATATTGAGCAGACAATTTACAGGAATTTTCAAAAGCTTACTCTCCAAGAGAGCCCAGGAATAGTTCCTGCTGGTCGACTTCCAAGATACAAGGACATTACTGAAGCTCATGCTAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTCGGTTCATTCATTTCAACTCAAAAGTTTGGTGTGCAGAAAGCTCTGCAAAAGAGCTTTAGAAAGTATATGACTTTCAAGAAGGACTATAATGAATTGCTTCTTTATCTTCTCCGCGAGCTTGTAAAGAATGCTTTGCATTTCGAAGAAATTGTCACCGGATCTGCTTCAGGTCTTAAGCATGTAGATGTGAAAATAGATGATCTCTACAACAAGGCTCAAGATCGTGAAATATATGATTTGAAACCCTTCTTCAGTAGCAGCCACTTTTCTAGGGCCAATTTTGTATTAGATGAAGAACGAGGAGTGATCAGACATCACCTTGCTACATGA 1389 0.4428 MAGNPSTPDPSSPTSPPASFNTDQLPHTHTSRASEGDEASVNPDIIRDEEQPDEDEEGEDLFNERFMDDYRGMEEADQAAEVELDNRDGRVSNRNKLPQLLHDQDDDSYRPSKRARADFRPPVPSDDDLDGMQSSPGRSERGHSREDVPMTDQTEDDRYEDEYDDEGGYRMYHVQGTLREWVTRDEVRRFIAQKFKDFLLTYVNPKNEHGQFEYVRLINEMVSANKCSLEIDYKQFIYLHRNIALWLAHAPQSVLEADPLKYNDPNWGSSNQNSYSEVKVGSCFECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKDITEAHARMHLRQHVTQEDVDMAIRVLLGSFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYLLRELVKNALHFEEIVTGSASGLKHVDVKIDDLYNKAQDREIYDLKPFFSSSHFSRANFVLDEERGVIRHHLAT 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00039 462 MobiDBLite consensus disorder prediction 99 125 - -
Sebi110g00039 462 Pfam MCM N-terminal domain 193 256 IPR027925 -
Sebi110g00039 462 MobiDBLite consensus disorder prediction 1 164 - -
Sebi110g00039 462 MobiDBLite consensus disorder prediction 64 92 - -
Sebi110g00039 462 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 272 327 IPR031327 GO:0003677|GO:0005524|GO:0032508
Sebi110g00039 462 Pfam MCM OB domain 265 328 IPR033762 -
Sebi110g00039 462 MobiDBLite consensus disorder prediction 48 63 - -
Sebi110g00039 462 Pfam Mini-chromosome maintenance protein 2 37 78 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Sebi110g00039 462 Gene3D - 296 379 IPR027417 -
Sebi110g00039 462 Gene3D - 185 262 - -
Sebi110g00039 462 SUPERFAMILY Nucleic acid-binding proteins 274 327 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00039 Sebi-Chr110 547589 550577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00039 298 457 Core DNA Replication Machinery Family AT1G44900 56.250 5.98e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00039 K02540 - gmx:100799441 395.971