Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00033 ATGGTGAGGTCTCCATGCTGTGAAAAAATCAGTGTCAAAAGGGGTACAAGTTCTGCAGAAGAAGATGCAAAGATACTTGCATTTGTTTCTAAGCATGGATCTGGTAATGGGACTTCTGTGTCCAAAAAATCAGGGCTTAAGAGGTGTGGAAAGAGTTGTAGGCTTAGGTGGACAAACTATCTCAGGCCTGATCTTAAGCATGATAACTTCACACCCCAAGAAGAAGATCTAATCATTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCTATAATAGCTCAACAACTTCCTGGAAGAACAGACAATGATGTAAAGAATTACTGGAACACAAAGGTGAAAAAGAAGCTCTCTCAATTGGGGATAGACCCTGTTACCCACAAGCCCTTCTCTAAACTCATTGCTGACTATGTAAACATTGGTGGTTGCCAGAAACCGAGTACCCGAATTGGGGCTATCAACAAAGACTTCAAGAATGCAATCCTGTTAAAATCAGAGCCAGATCAAACCCTGCCACACACCAATGGCCAACCAAAGCAACCACCAACATTGCAATCTAAAGTGGAAACAACTGGAACTAGCTTTCTAGTTAGCAGAGGTCAAAGTGATAACCTTTCAATGGATCTTTCCCAACTCCAAGACATACCAACAGTGACAGCACAAGAAGCCTTATCAGTACCCTTCAGTTGGAATGACTTTCTTCTAGAAGATGCTTTTGCACCACCTGCTGATAACCAAGAACAAGAAATTGTGTCCGGGTTCTTGTCAAAGGACTTGGCGGGCCAAATAGAGAATGTCACAAGACAAAGTTGGAATAAGAAAGAGGTCAATTCACAGCATGCCCCAAACAGTGACTCCCAAATTTCATCATCCTCTGACATGTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTATTTCTGAGTTTTCCTCACCTTATGGAGGAACCGTCCAACTACTGA 966 0.4244 MVRSPCCEKISVKRGTSSAEEDAKILAFVSKHGSGNGTSVSKKSGLKRCGKSCRLRWTNYLRPDLKHDNFTPQEEDLIIKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNTKVKKKLSQLGIDPVTHKPFSKLIADYVNIGGCQKPSTRIGAINKDFKNAILLKSEPDQTLPHTNGQPKQPPTLQSKVETTGTSFLVSRGQSDNLSMDLSQLQDIPTVTAQEALSVPFSWNDFLLEDAFAPPADNQEQEIVSGFLSKDLAGQIENVTRQSWNKKEVNSQHAPNSDSQISSSSDMSFVEAMLDQENEMLFLSFPHLMEEPSNY 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00033 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi110g00033 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi110g00033 321 CDD SANT 69 110 IPR001005 -
Sebi110g00033 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi110g00033 321 FunFam Os07g0634900 protein 69 128 - -
Sebi110g00033 321 PANTHER F14D16.11-RELATED 1 321 - -
Sebi110g00033 321 Gene3D - 7 67 - -
Sebi110g00033 321 MobiDBLite consensus disorder prediction 270 290 - -
Sebi110g00033 321 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Sebi110g00033 321 Pfam Myb-like DNA-binding domain 18 61 IPR001005 -
Sebi110g00033 321 CDD SANT 18 61 IPR001005 -
Sebi110g00033 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi110g00033 321 Gene3D - 69 128 - -
Sebi110g00033 321 FunFam MYB-related transcription factor 13 66 - -
Sebi110g00033 321 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Sebi110g00033 321 SMART sant 13 63 IPR001005 -
Sebi110g00033 321 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00033 Sebi-Chr110 461644 463252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00033 1 317 MYB Transcription Factor Family AT3G28470 41.420 1.28e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi110g00033 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00033 K09422 - gmx:100795381 408.683