Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00024 ATGGATGTTGCATCAAAGGATTCCAGGACAGAAGCAGTAGCACCTACCTCCCTGAGGATAGCTCTTAGCAATCTATATCCAGATAGTAACTTCTTCCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTAGCAGTGATATTTGACTGCCTCCATCGATCATTCACTTGTGGTTCAAGTGTTTCTGATTCAGAATCAGTAGAAAGCAACTGCATGGGATCTTGGGATTGTGCAAACAGTACTTGTATAGTACATTCAGTTTTTGGAATGGACATTTTTGAACGAATGAACTGCTATCACTGTGGTCTTGAGTCAAGGCACTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTTCGGACAATGAAGGTTATGTGCCCTGAAAGCTCCTTTGATGAGCTTTTGAATCTTGTGGAGATGAATGATCAGTTGGCTTGTGATCCAGAAGTTGGTGGTTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACTCCACCACATGTTTTCATGACAGTTCTTGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACTGCAACTGTTGAAGCCCTGAGCACTGAGATGGATATCAGTATCCTCTATCGTGGTTTAGATCCTAAAAGCACCCATAGCTTGGTTTCAGTGGTTTGCTACTATGGGCAGCATTATCATTGCTTTGCTTATAGCCATGACCATGAACAATGGATTATGTATGATGATAAGACTGTCAAGATAATTGGTGGATGGGCTGATGTTCTTAAAATGTGTGAAAGAGGGCATCTACAACCTCAGAACATTGAGTTTGACAGTTTGGCATCCAACTAG 840 0.4155 MDVASKDSRTEAVAPTSLRIALSNLYPDSNFFQEAQMNDASEVLAVIFDCLHRSFTCGSSVSDSESVESNCMGSWDCANSTCIVHSVFGMDIFERMNCYHCGLESRHLKYTSFFHNINANALRTMKVMCPESSFDELLNLVEMNDQLACDPEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATVEALSTEMDISILYRGLDPKSTHSLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKIIGGWADVLKMCERGHLQPQNIEFDSLASN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00024 279 CDD Peptidase_C19 35 251 - -
Sebi110g00024 279 Pfam Ubiquitin carboxyl-terminal hydrolase 7 251 IPR001394 GO:0004843|GO:0016579
Sebi110g00024 279 PANTHER UBIQUITIN SPECIFIC PROTEINASE 4 270 - -
Sebi110g00024 279 Gene3D Cysteine proteinases 1 270 - -
Sebi110g00024 279 SUPERFAMILY Cysteine proteinases 9 258 IPR038765 -
Sebi110g00024 279 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 270 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00024 Sebi-Chr110 347323 349301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00024 1 269 C2H2 Transcription Factor Family AT3G47890 78.067 8.92e-156 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00024 - - lja:Lj1g3v0449000.2 531.176