Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi110g00020 ATGGGAAACTGCAACGCTTGCACAAGAGCTGACGTGGTGGAGGACAACACCAAGTCCAACGACCCGAACCGCGGTCGAAAGAAGGAAACGAACCAAAAAAAACCGAACTCACACGCGAATGAACCGGTCCGTTCGGCGGCCCCGATCCGGGTGCTGAGAGACGTGATTCCAATGAGCCACCGGACTCGAATCAGCGACAAGTACATATTGGGCCGAGAATTGGGCCGGGGCGAGTTCGGGATCACGTACCTGTGCACGGACCGCGAGACGAAGGAGGCACTGGCCTGCAAGTCAATCACGAAGCGGAAGCTTCGAACCGCGGTGGACATCGAAGACGTGAGGCGCGAGGTGGCTATTATGTCCACGCTGCCGGAACACCCTAACATCGTGAAGCTTAAGGCAACCTATGAGGATAACGAGAACGTGCACCTCGTCATGGAGCTCTGTGAGGGTGGCGAGCTCTTCGACCGGATTGTTGCCAGGGGTCACTACAGTGAACGCGCCGCCGCCAACGTAGCTCGAACCATCGCTGAGGTAGTCAGGATGTGCCATGCCAACGGAGTCATGCATAGGGACCTCAAACCAGAGAATTTTCTCTTCGCTAACAAGAAAGAGAATTCGCCTCTTAAGGCTATTGATTTTGGCCTCTCTGTGTTTTTCAAACCTGGAGAGAGGTTTTCAGAGATTGTTGGGAGTCCTTACTACATGGCTCCGGAGGTATTGAAGAGGAATTATGGGCCAGAAGTTGATGTATGGAGCGCTGGGGTTATTCTTTATATTCTCTTATGTGGTGTTCCTCCGTTTTGGGCAGAGAGTGAGCAAGGGGTGGCTTTGGCTATTTTAAGGAGCGTGATTGACTTTAAGAGGGAACCTTGGCCTCAGATATCAGAAAGTGCTAAGAGCCTTGTGCGAGGGATGACTTTAAAATATGGTGGAGAAACTCATCAGCAGAGAACCTGTAAAAAGAAGGAACATCCTTGGCTGCAAAATGCAAAGAAAGCTCCAAATGTTCCATTAGGAGATATTGTAAGGTCAAGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATAAAAGATATGTTTACATTGATGGATACTGACAAAGATGGCAGAGTAACATACGAGGAACTGAAGGCTGGGATGAGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTATTTGAAGTGGAAGCATTAACAGATGAGTCAGGAGTAGCTGATGCTGATGTATTGAATGACATCATGTGTGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTAGCCATGATGAAAACTGGAACAGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTTTGAGCCTAAATTTGATGAAGGACGGCTCACTTCAGCTTCATGATGGAATTAGTGGTCAAGCTGTTGTGGTTTGA 1506 0.4788 MGNCNACTRADVVEDNTKSNDPNRGRKKETNQKKPNSHANEPVRSAAPIRVLRDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSITKRKLRTAVDIEDVRREVAIMSTLPEHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAANVARTIAEVVRMCHANGVMHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAESEQGVALAILRSVIDFKREPWPQISESAKSLVRGMTLKYGGETHQQRTCKKKEHPWLQNAKKAPNVPLGDIVRSRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELKAGMRKVGSQLAEPEIKMLFEVEALTDESGVADADVLNDIMCEVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGQAVVV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi110g00020 501 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Sebi110g00020 501 Pfam EF-hand domain pair 376 458 IPR002048 GO:0005509
Sebi110g00020 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Sebi110g00020 501 SMART efh_1 375 403 IPR002048 GO:0005509
Sebi110g00020 501 SMART efh_1 432 460 IPR002048 GO:0005509
Sebi110g00020 501 MobiDBLite consensus disorder prediction 15 46 - -
Sebi110g00020 501 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Sebi110g00020 501 Gene3D Transferase(Phosphotransferase) domain 1 154 338 - -
Sebi110g00020 501 Gene3D - 369 417 - -
Sebi110g00020 501 ProSiteProfiles Protein kinase domain profile. 68 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00020 501 Gene3D - 424 499 - -
Sebi110g00020 501 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Sebi110g00020 501 Gene3D Phosphorylase Kinase; domain 1 69 153 - -
Sebi110g00020 501 PANTHER SERINE/THREONINE-PROTEIN KINASE 61 441 - -
Sebi110g00020 501 SUPERFAMILY Protein kinase-like (PK-like) 65 331 IPR011009 -
Sebi110g00020 501 Pfam Protein kinase domain 70 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00020 501 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Sebi110g00020 501 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Sebi110g00020 501 CDD STKc_CAMK 67 327 - -
Sebi110g00020 501 FunFam Calcium-dependent protein kinase 1 70 153 - -
Sebi110g00020 501 CDD EFh 376 458 IPR002048 GO:0005509
Sebi110g00020 501 MobiDBLite consensus disorder prediction 15 35 - -
Sebi110g00020 501 SMART serkin_6 68 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi110g00020 501 SUPERFAMILY EF-hand 356 484 IPR011992 -
Sebi110g00020 501 Gene3D - 346 368 - -
Sebi110g00020 501 FunFam calcium-dependent protein kinase 13 154 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi110g00020 Sebi-Chr110 274053 278268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi110g00020 1 501 EF-hand Containing Proteins AT1G18890 71.920 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi110g00020 Pkinase 3.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi110g00020 K13412 - gmx:100809838 848.58