Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1109g00004 ATGGCACTAACCTTCTTCATCTTCTACTGTACAATTTGTTATACCAATGCAGTGGACATGGAATCTGATGTAGAAGATCAGTTTTCAGAAGCATATGCTATTGAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGGTCCAATATTCCCCTCCACAACAAAGATTGGGTAGCTGCTTGCCTAGTTAAATTAAGTTCTCTCTCTGATCACAACATGAGTTTTAATCCAATCAATGTTGAAGTTACACTTTATGAGACAATCCCAAGACTTGTAGAACAGATCAAAACTTCATTCTCACCAGAGGCACAGGAAGATGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGAAGCTATTATTTCTGGGGGTGCAGTATATCCATTGGTGAAGCTGATTGAAGATGGCAGTGAAAGGGCTGTTGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCTGCACTTGTGGCCGCTGAAGCAGTCCCAGCCTTAAGAAGATTTGTTCTATCACACAGACCACAGTGGGAAAAGGCACTTCTTTTATTAAGGAGTTTGCAAATGTGA 603 0.4046 MALTFFIFYCTICYTNAVDMESDVEDQFSEAYAIEFEEAGLAISAASRSNIPLHNKDWVAACLVKLSSLSDHNMSFNPINVEVTLYETIPRLVEQIKTSFSPEAQEDAVVELNRIISEGVVDSTEAIISGGAVYPLVKLIEDGSERAVEASLAILYNLSMDSENHSALVAAEAVPALRRFVLSHRPQWEKALLLLRSLQM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1109g00004 200 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 131 173 IPR000225 GO:0005515
Sebi1109g00004 200 SUPERFAMILY ARM repeat 60 183 IPR016024 -
Sebi1109g00004 200 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 48 199 - -
Sebi1109g00004 200 Gene3D - 24 199 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1109g00004 Sebi-Chr1109 79957 80644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1109g00004 128 187 U-box Gene Family AT3G54850 35.000 6.29e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1109g00004 - - gmx:100793128 269.24