Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1108g00002 ATGGGCAGCAAGAGATACTTCTGGTTTTCTCTCCCCTTTCAATTTCTCCAGAAGGTTCATATTTACAGCATTATTTTCTGGGAAACGGGGGAGAAAGATGTTGCGTTTAAAGTGTTATACTGTGGAATATGCCACTCTGATCTCCACATGCTCAAGAATGAATGGGGCATGTCTATTTATCCACTTGTCCCTGGGCATGAGATTGTTGGCATAGTAACAGAGGTGGGAAGCAAGGTACAAAAGTTTAAAGTTGGGGACAGAGTGGGTGTGGGATGCATGGTTGATTCCTGCCGCTCATGCCAAAATTGTGCTGACAATCTTGAGAATTACTGCCCACGTTATACTCTCACATATAGTGCTAAATATGTTGATGGCACCACCACATACGGAGGCTACTCTGACTCAATGGTAGCAGATGAAAACTTTGTGGTTGGCATTCCTGATGGTTTACCTCTTGATGCTGCTGCACCTCTCCTCTGTGCTGGAATCACAGTATATAGCCCTCTTAGATATTTTGGACTTGACAAGCCTGGTTTGCATGTGGGTGTGGTTGGTCTCGGTGGATTAGGCCATATGGCTGTCAAATTTGCCAAAGCTTTTGGGGCTAATGTGACTGTTATCAGTACATCACCCAACAAACAGAAGGAAGCAATAGAACATCTAGGAGCTGATTCTTTTTTGATAAGCCGTGACAATGATCAGATGCAGGCTGCAATGGGTACTTTTGATGGTATTATTGACACGGTTTCTGCGGTTCATCCTCTGTTACCTTTGATTGGTTTATTGAAGTCTCATGGAAAGCTTGTAATGGTGGGCGCACCAGGGAAGCCTCTGGAGTTGCCGGTCTTTCCTTTACTTCTGGGGAGAAAGATAGTAGCTGGGAGTAGCATTGGGGGGATGAAGGAAACACAAGAGATGATTGACTTTGCAGCAGAACATAATGTAAAACCTGACATTGAAGTCATTCCAATTGATTATGTCAACACAGCATTGGAGCGTCTCCTTAAAGCGGATGTCAAATACCGATTTGTGATTGACATTGGAAACACACTGAAACCAAGCTCTTAG 1068 0.4391 MGSKRYFWFSLPFQFLQKVHIYSIIFWETGEKDVAFKVLYCGICHSDLHMLKNEWGMSIYPLVPGHEIVGIVTEVGSKVQKFKVGDRVGVGCMVDSCRSCQNCADNLENYCPRYTLTYSAKYVDGTTTYGGYSDSMVADENFVVGIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKQKEAIEHLGADSFLISRDNDQMQAAMGTFDGIIDTVSAVHPLLPLIGLLKSHGKLVMVGAPGKPLELPVFPLLLGRKIVAGSSIGGMKETQEMIDFAAEHNVKPDIEVIPIDYVNTALERLLKADVKYRFVIDIGNTLKPSS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1108g00002 355 FunFam Putative cinnamyl alcohol dehydrogenase 6 318 347 - -
Sebi1108g00002 355 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Sebi1108g00002 355 Gene3D - 161 317 - -
Sebi1108g00002 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
Sebi1108g00002 355 PANTHER ALDEHYDE REDUCTASE 23 350 IPR047109 GO:0016616
Sebi1108g00002 355 SMART PKS_ER_names_mod 14 345 IPR020843 GO:0016491
Sebi1108g00002 355 FunFam Uncharacterized protein 16 160 - -
Sebi1108g00002 355 Gene3D - 24 347 - -
Sebi1108g00002 355 Pfam Zinc-binding dehydrogenase 188 311 IPR013149 -
Sebi1108g00002 355 Pfam Alcohol dehydrogenase GroES-like domain 32 144 IPR013154 -
Sebi1108g00002 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 316 IPR036291 -
Sebi1108g00002 355 CDD CAD1 28 346 IPR047109 GO:0016616
Sebi1108g00002 355 SUPERFAMILY GroES-like 19 178 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1108g00002 Sebi-Chr1108 9869 11493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1108g00002 12 354 Monolignol Biosynthesis Gene Families AT4G37990 70.262 7.44e-164 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1108g00002 K23232 - gmx:100816901 564.688