Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1104g00006 AAACCTGGTGGCATTATTGCTCTTCTGGACGAAGCTTGTATGTTTCCTCGATCAACACATGAAACTTTTGCCCAAAAGCTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCCAAATTATCACGTAGTGACTTTACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTGTTCCTCGACAAGAACAAAGATTATGTTGTTGCAGAGCACCAGGCACTTCTTCATGCTTCCAAATGCCCCTTTGTATCAGCCTTATTTCCCCCTTCACCTGAGGAATCTTCCAAACAATCAAAGTTCTCTTCAATAGGTTCCCGATTTAAGCAACAATTGCAAGCTTTACTTGAAACTCTGAGTTCCACTGAGCCACACTACATTCGATGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTGCGTTGTGGGGGAGTCATGGAGGCAATTAGGATAAGCTGTGCCGGGTTTCCCACTAGAAAAACCTTTGATGAGTTTGTGGATCGATTTGGCCTGCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTAACTGCTTGCAAGAGGATCCTAAAGAATGTTGGACTTGAAGGCTATCAGATTGGTAAAACTAAGGTGTTTCTTCGAGCTGGTCAAATGGCAGAACTAGATACCCGAAGAAGTGAGATCTTGGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTCCGTTCCTATTTGGCCCGCCAAAGTTTCATCTTGCTTCGTTTATCAGCTATGCAGATTCAAGCTGCATGCAGAGGACAACTTGCTAGGCAAGTTTATGAGGGAATGCGGCAGGAGGCTTCTAGTCTGCTGATTCAAAGGTATTTCCGCATGCATATTGCTAGGAAGACATACAAAGAATTGTATGCCTCTGCTGTCTCTATCCAGACTGGAATGCGGGCGATGGTTGCTCGTTGTGAGCTACACTTTAGAAGGCAGACTAGAGCAGCAATTGTCATTCAGAGCTACTGCAGGAAATACCTGGCACGACTTCATTTCATGAAATTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTGCGGAAGCTCAAGATAGGACTCAAGATAATAGTTATACAATACAAAGTGAGTTTAGAATTCAGTGAATTCCTAGGTGTATTGACATTGGGTCCAAACTCTACCACATCCTCTCATCTAATGAAGATGTGCAAACCAGATTGCATATCCCAGAAAGCATTACCAGCTGCACATCTTGTTTGGGTTTACTTTGTTACATTGTCTTGTGAAGAGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTAAGGTTACAGCTGGAAAAACGTTTGAGGGTGGACATGGAAGAAACAAAAGCAAAAGAAAATGAAAGATTACAGTCAGCTTTGCAAGAGATGCAACTTCAGTTTAACGAAACTAAATTACTTCTTGAGAAGGAGCGGGAGGCTACAAAAACAGTGGTGGAAAGAGTGCCTGTCATACAGGAGGTTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTTGGTAGTGAAAATGAGAAACTCAAGAACTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGCAAACAGAATCAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCTAAAATAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCACAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTGCTAAACTCATCTGTAAAAACAATAGCAGAGCACCTCTCTGCTCCCGTAGCTGAGAAGTTAGAAAATGGTCATCATGAGGCAGAAGAACAGAAAGCTGTTGATACATGTGTTACACCTGTGAAACAATTTGGTACAGAATCCGACTCTAAACTGAGGAGATCTTACATTGAAAGACAACATGAGAGTGTTGATTCACTTGTCAACTGTGTTATGAAAAACATTGGCTTCAATCATGGAAAGCCTATTGCTGCATTTACCATTTACAAATGTCTGCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTTGTCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGACCTGATGGCCTATTGGCTGTCAAACACCTCTGCCTTATTGCTTTTACTTGAAGAAAGCCTGAAATCTGGGACTTTAACAAATGCAACCCCGAGTAGAAAACCTCCTAATCCAACATCCCTCTTTGGAAGAATGACTATGGGTTTTCTTTCATCCCCTTCTTCTGCTAAACTTGCTGCCCCTCCATCAGAGGTTGTACGCAAGGTGGAGGCTAAATACCCTGCCTTGCTTTTCAAGCAGCAGCTAACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAACTTGAAGAAGGAGTTAACATCGGTTCTTGCATTATGTATTCAGAAACTTCAAAAGGATTCTAAGCCTACAGTTTTAGTCACCAATGTTCTTTGTTCTGTTCCTTATGCAAACCTCATTGACAACATACAGGCACCAAGAACATCAAAGGCAGTGTTGCGATCTGGCCGATCCTATGGTAAAGATTCCCCAATGGTTCACTGGAACTGTATTATTGAATCTCTCAACACCCTCCTCTGTACTCTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCTTATATTAATGTGCAACTCTTCAATAGTCTTCTCCTCCGTCGCGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGTTGCCAAGCAAAGGAGGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGTTTCTTGGTTATTCATCAGAAGTATAGGATATCCTATGATGAAATCATTAATGATTTATGCCCTATCCTGAGTGTCCAGCAGCTGTATAGATATGTACACTTTACTGGGATGGTCCTTTCCAGCATGAAGATGCTTATGGCTGAGGACTCCAATAATGCTCAGAGCGATTCGTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGACCTCTCTACATCATTGCAAGATAAGGATTTCTCAGACATGAAACCAGCAGATGAGCTTCTTGAAAATCCAGCCTTCCAGTTTTTAAATGAGTAG 3291 0.4148 KPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLHASKCPFVSALFPPSPEESSKQSKFSSIGSRFKQQLQALLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEALDGSSDEVTACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSYLARQSFILLRLSAMQIQAACRGQLARQVYEGMRQEASSLLIQRYFRMHIARKTYKELYASAVSIQTGMRAMVARCELHFRRQTRAAIVIQSYCRKYLARLHFMKLKKAAITTQCAWRGKVARRELRKLKIGLKIIVIQYKVSLEFSEFLGVLTLGPNSTTSSHLMKMCKPDCISQKALPAAHLVWVYFVTLSCEEAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEETKAKENERLQSALQEMQLQFNETKLLLEKEREATKTVVERVPVIQEVPVVDHALLEKLGSENEKLKNLVSSLEKKIDETEKRYEEANRISEERLKQALDAESKIIQLKTAMQRLEEKFTDMESANHILQKQSLLNSSVKTIAEHLSAPVAEKLENGHHEAEEQKAVDTCVTPVKQFGTESDSKLRRSYIERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLVQMIGSAIENQDDNDLMAYWLSNTSALLLLLEESLKSGTLTNATPSRKPPNPTSLFGRMTMGFLSSPSSAKLAAPPSEVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKELTSVLALCIQKLQKDSKPTVLVTNVLCSVPYANLIDNIQAPRTSKAVLRSGRSYGKDSPMVHWNCIIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRYVHFTGMVLSSMKMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQDKDFSDMKPADELLENPAFQFLNE 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1104g00006 1096 FunFam Myosin XI D 237 286 - -
Sebi1104g00006 1096 SMART iq_5 307 329 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART iq_5 236 258 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART iq_5 332 354 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART iq_5 259 281 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART iq_5 355 377 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART iq_5 284 306 IPR000048 GO:0005515
Sebi1104g00006 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 289 384 IPR027417 -
Sebi1104g00006 1096 Coils Coil 539 615 - -
Sebi1104g00006 1096 ProSiteProfiles IQ motif profile. 308 337 IPR000048 GO:0005515
Sebi1104g00006 1096 ProSiteProfiles Myosin motor domain profile. 1 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00006 1096 Gene3D - 1 125 - -
Sebi1104g00006 1096 FunFam unconventional myosin-Va 287 335 - -
Sebi1104g00006 1096 FunFam unconventional myosin-Va 336 382 - -
Sebi1104g00006 1096 ProSiteProfiles Dilute domain profile. 723 1042 IPR002710 -
Sebi1104g00006 1096 Pfam Myosin head (motor domain) 1 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00006 1096 Pfam DIL domain 929 1025 IPR002710 -
Sebi1104g00006 1096 ProSiteProfiles IQ motif profile. 356 384 IPR000048 GO:0005515
Sebi1104g00006 1096 Gene3D - 168 235 - -
Sebi1104g00006 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 287 IPR027417 -
Sebi1104g00006 1096 ProSiteProfiles IQ motif profile. 260 289 IPR000048 GO:0005515
Sebi1104g00006 1096 ProSiteProfiles IQ motif profile. 285 314 IPR000048 GO:0005515
Sebi1104g00006 1096 ProSiteProfiles IQ motif profile. 333 362 IPR000048 GO:0005515
Sebi1104g00006 1096 SMART DIL_2 928 1034 IPR002710 -
Sebi1104g00006 1096 Gene3D Myosin VI head, motor domain, U50 subdomain 70 103 - -
Sebi1104g00006 1096 Gene3D Kinesin motor domain 126 164 IPR036961 -
Sebi1104g00006 1096 Coils Coil 444 517 - -
Sebi1104g00006 1096 PANTHER MYOSIN 1 337 - -
Sebi1104g00006 1096 CDD MyosinXI_CBD 674 1065 IPR037975 GO:0007015
Sebi1104g00006 1096 Gene3D - 287 334 - -
Sebi1104g00006 1096 Gene3D - 237 286 - -
Sebi1104g00006 1096 Gene3D - 335 381 - -
Sebi1104g00006 1096 SMART MYSc_2a 1 235 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00006 1096 Pfam IQ calmodulin-binding motif 239 257 IPR000048 GO:0005515
Sebi1104g00006 1096 Pfam IQ calmodulin-binding motif 263 280 IPR000048 GO:0005515
Sebi1104g00006 1096 Pfam IQ calmodulin-binding motif 358 377 IPR000048 GO:0005515
Sebi1104g00006 1096 Pfam IQ calmodulin-binding motif 334 353 IPR000048 GO:0005515
Sebi1104g00006 1096 Pfam IQ calmodulin-binding motif 288 306 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1104g00006 Sebi-Chr1104 61664 71451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1104g00006 1 1095 Myosins gene family AT5G43900 57.937 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1104g00006 K10357 - gmx:100795648 1635.16