Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1104g00005 ATGGAGTGTCTACCGATGCTTTCAACTACATGGGTTATTAAACCTATGTTGCAGCTTCAGTCTAAGGCTAAAGCTTCTGCCGCCAATCCTGTAGTTGGGTCCCATGTTTGGGTGGAGGATTCTGATGTAGCTTGGATAGATGGCGAGGTCTTGGAGGTTAAAGGACAAGAAACTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACGGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTACGTACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATTAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAGTTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCGTATAGGCTTATGATGAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACGGAAAGTACCAAGTTACTCATGCGGTATCTTGCTTACATGGGAGGGAGAGCTGCTGCTGAAGGCAGAACTGTTGAGCAAAAAGTCCTAGAGTCCAATCCTGTGTTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGATCAGAGGGGAAGAATATCTGGTGCTGCTATCAGAACTTATCTGTTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAGTTATCATTGTTTCTACATGCTATGTGCTGCACCTCCGGAGGATGTTAAGAAATACAAATTAGGACATCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTATGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGTGCTACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCAAGTTATTGCTGCAATTTTGCATCTTGGGAACATTGAATTTGTGAAAGGGAAGGAGATAGATTCATCTATGCCCAAAGATGAAAAATCCCGGTTCCATCTACAGACTGCAGCTGAGCTTTTCATGTGTGACCCAAAGGCACTTGAAGATTCCCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACGATTACAAAATGGCTGGATCCAGAAGCTGCTGCACTCAGCCGAGATGCGTTGGCTAAGATAGTATACACTAGGTTGTTTGACTGGTTGGTTGATAAAATAAATAGTTCCATTGGTCAAGACCCTGAGTCAAAATCCTTAATTGGAGTGCTGGATATTTACGGTTTTGAGAGTTTCAAGTCTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTCAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAGATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTTATTGAAAAG 1563 0.4005 MECLPMLSTTWVIKPMLQLQSKAKASAANPVVGSHVWVEDSDVAWIDGEVLEVKGQETKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMTKLTYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMMNEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERSYHCFYMLCAAPPEDVKKYKLGHPRTFHYLNQSNCYELEGVDESKEYSATRRAMDVVGISSEEQDAIFQVIAAILHLGNIEFVKGKEIDSSMPKDEKSRFHLQTAAELFMCDPKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINSSIGQDPESKSLIGVLDIYGFESFKSNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1104g00005 521 Gene3D Myosin VI head, motor domain, U50 subdomain 335 468 - -
Sebi1104g00005 521 Gene3D - 469 521 - -
Sebi1104g00005 521 Pfam Myosin N-terminal SH3-like domain 33 75 IPR004009 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 521 IPR027417 -
Sebi1104g00005 521 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 31 80 IPR004009 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 SMART MYSc_2a 79 521 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 Gene3D Kinesin motor domain 35 318 IPR036961 -
Sebi1104g00005 521 FunFam Myosin 2 335 453 - -
Sebi1104g00005 521 ProSiteProfiles Myosin motor domain profile. 85 521 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 Pfam Myosin head (motor domain) 87 521 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PRINTS Myosin heavy chain signature 219 246 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PRINTS Myosin heavy chain signature 172 197 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PRINTS Myosin heavy chain signature 115 134 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PRINTS Myosin heavy chain signature 452 480 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PRINTS Myosin heavy chain signature 505 521 IPR001609 GO:0003774|GO:0005524|GO:0016459
Sebi1104g00005 521 PANTHER MYOSIN 81 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1104g00005 Sebi-Chr1104 55743 60477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1104g00005 29 521 Myosins gene family AT5G43900 84.178 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1104g00005 K10357 - gmx:100819463 956.051