Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1104g00001 ATGATCGCCGGTGGCTGCTTTGCCGGAATTCCGCGAGCTGCGGCGGCGAGGTTCCTCAGCTCGAACCTGCTTCCTTCTGACGATGCTTTTGGCTTGTTTTCTGTTCGGCGAGAGAGAATGCCGGTGTCGGTTATCTTCCTCCTTGCTCTTCTTAACTTGCTTTTCTCTTGCCAAGTGAAGTCATTTTCTCTGAGTGTGTCATTTACTTCATCGGAACGAGCTAAAACGTGGTTAGTTAAACCTTCTTCTGGACCATCTTATGCACCTGCTCCATCTCCATCTTATCGAGGACCCAGTGTGATTCCAAGACCAAAACACCACCGTCATCACCATCGTCATCATAGCAGGAGACCTTATGTAGTGGCTCCACCCCCTTCTAAAGACCAAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACATATTTGGAGCAGAGTCAGGTGAAAATAATGGGTGCCAGTGCTGACAGTCAAAATCAGGGAAGAACTATTGTTGATATTAACTTGGTTCCACTAGGAGAGAAATTTGACAATACAACTGCTGCTCTGACATATGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGCCTGTTTGGTGATTATGCTGTTGTGTACATTACATATCCAGGAATGCCATCATCGCCACCGGATGGAACTTTTATCGGGAGTGGTCCCAGTGAAAATGCTGATGGTATACTGCCAGTCAGTGCCAACTTTGCCAACAAGAACCAGAAAACGAATCTTAGAACCATAATCATCGTTGCTTTATCTTCCTTTGTGCTCTTGCTGGTCTTGGTTGGAGCATTTTCCATCACTTTGAAATGGAGGAAGACTAGGAGACCATCGAGTGCTGTTGGCCCTGCATTCACATCTTCTCTAAACAAGAGATCTGGCTTGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCGACATCAATGTCCCTCATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACGGACAAGTTTAATTCAAAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAGGATGGGACTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGAAATTTAGTGAAACTTATTGGTATATGCATTGAAGGCCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCCCAATGGCAGTGTTGAGTCCCATCTGCATGGTGAGGACAAGAAAAAGGGTCCTCTAGATTGGGAAGCACATATGTCTCAACCTCAGGGACAGGAGAATCTGGTAACTTGGGCACGGCCACTGTTGACTAGTAGAGAAGGTTTAGAACAGCTAGTAGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTTCACCCGGAGGTCACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAATGACACAGATGAGACTTGTGGAGATTATTGTAGTCAGAAGGACTCCTCTACTCAGGAGTCAGACTTTAGAGGCGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCTGGAGGGTTAACCCCTCGATTAACTTATGGTCAAGCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACTTCAAGCTTGATTGGAGATGAGATATCTTTACCAATTAGGCATGGAAATAGATCAGGTCCCTTAAGAACAGTCCGAAGCAAGCTATCTTTACATAGATTTACAGGGAGCAGGAGTGAGCATGGGGGACTTTCTTCCAAGCGTAATAGGAATGATGATGATGATGATACTCCTCCGTCTAAAGTTTTGGGTTTTGAGTTCAGAGATTTGAGTGGCACCACCATGTCCTGTGATTTCGTTCCCGAGAACTCCATTATTGTAGGGTGTGGGGCGGTGGGCGTGGATTTCTTGGCTACTGTTGCTGCTTTTCCTAAGCCTGATGACAAAATCAGAAGCACCTCCTTCACGGTTCAAGGAGGTGGCAATACAGGCAATGCCTTAACCTGTGCTGCTCGCTTGGGCCTCAAGCCAAGGATCATCTCCAAGGTTGCAGATGACACTCAAGGTAGGAGCATATTAGATGGGTTGCAGGCTGATGGCGTAGATACGTCCTTTATGGTGGTATCTAAGGGAGGCACTTCACCATTTACCTATATCATTGTGGACAACCAAACTAAATCCCGTACTTGTATACATACCCCAGGATTTCCTCCAATGAAGCCAGATGAACTTCCTGAATCAAGTTTGTTATCTGTAATGAATGGAGCAAGAATTGTTTATTTTGATGGGAGACTGCATGAAACTGCTCTAATTCTTGCACATGAGGCAGTTAAGAAGAATATACCGATATTAATGGATGCAGAAAGGCTGAGAGAAGGGTTGGATGATCTCCTGCAATTTGTTAATTATGTTGTATGTGCTGCACAATTTCCACAGGCATGGACAGAGGCATCAACTGTTCCAAAAGCACTTGTTTCTATGCTTTTAAGGTTGCCCAAGGTCAAATTTGTGATTGTAACTTTGGGAAAAGATGGTTGCATAATGCTTGAGAGAAGTGTTGATGAGGGTCCGTCAACAGAAGAAGTGGATATTGACGAATTACTCAAATCCTTGGAGATGAGAAAAAATGGGAGCATATACATCCCAACCTGCATATCATCACCAGTGACAAAATTGCGGGCAGAAGGTATAGGAACGATTTGTGGTAGGTTATATGTTGGAACAGCTGAGAACATACCACCATCAGAGCTTATGGATACCACTGGTGCTGGAGATTCATTTGCTGGCGCTGTTCTCTATGCCATCTGTGCCAACTTTGGAAAAGAGAAAATGCTATGCTTTGCTGCCACTGTGGCATCTGCCAAGTGCAGAGGTGTAGGAGCACGAAGTGGTCTTCCTTACCACACAGACCCACGCCTAACAACCTTCATGCAGTAG 3081 0.4456 MIAGGCFAGIPRAAAARFLSSNLLPSDDAFGLFSVRRERMPVSVIFLLALLNLLFSCQVKSFSLSVSFTSSERAKTWLVKPSSGPSYAPAPSPSYRGPSVIPRPKHHRHHHRHHSRRPYVVAPPPSKDQVMTELENEIALGTYLEQSQVKIMGASADSQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPDGTFIGSGPSENADGILPVSANFANKNQKTNLRTIIIVALSSFVLLLVLVGAFSITLKWRKTRRPSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSMSLMSTMATSILSVKTFSLSELEKATDKFNSKRVLGEGGFGRVYSGTLEDGTEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVPNGSVESHLHGEDKKKGPLDWEAHMSQPQGQENLVTWARPLLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDYCSQKDSSTQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRSKLSLHRFTGSRSEHGGLSSKRNRNDDDDDTPPSKVLGFEFRDLSGTTMSCDFVPENSIIVGCGAVGVDFLATVAAFPKPDDKIRSTSFTVQGGGNTGNALTCAARLGLKPRIISKVADDTQGRSILDGLQADGVDTSFMVVSKGGTSPFTYIIVDNQTKSRTCIHTPGFPPMKPDELPESSLLSVMNGARIVYFDGRLHETALILAHEAVKKNIPILMDAERLREGLDDLLQFVNYVVCAAQFPQAWTEASTVPKALVSMLLRLPKVKFVIVTLGKDGCIMLERSVDEGPSTEEVDIDELLKSLEMRKNGSIYIPTCISSPVTKLRAEGIGTICGRLYVGTAENIPPSELMDTTGAGDSFAGAVLYAICANFGKEKMLCFAATVASAKCRGVGARSGLPYHTDPRLTTFMQ 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1104g00001 1026 Gene3D Phosphorylase Kinase; domain 1 315 419 - -
Sebi1104g00001 1026 FunFam receptor-like serine/threonine-protein kinase ALE2 317 419 - -
Sebi1104g00001 1026 CDD ribokinase_group_B 673 1015 - -
Sebi1104g00001 1026 SUPERFAMILY Protein kinase-like (PK-like) 308 442 IPR011009 -
Sebi1104g00001 1026 Pfam pfkB family carbohydrate kinase 678 900 IPR011611 -
Sebi1104g00001 1026 Pfam pfkB family carbohydrate kinase 958 1014 IPR011611 -
Sebi1104g00001 1026 MobiDBLite consensus disorder prediction 631 648 - -
Sebi1104g00001 1026 MobiDBLite consensus disorder prediction 79 125 - -
Sebi1104g00001 1026 Gene3D - 673 1011 IPR029056 -
Sebi1104g00001 1026 Gene3D Transferase(Phosphotransferase) domain 1 436 538 - -
Sebi1104g00001 1026 PRINTS Ribokinase signature 676 697 IPR002139 GO:0016301
Sebi1104g00001 1026 PRINTS Ribokinase signature 885 896 IPR002139 GO:0016301
Sebi1104g00001 1026 PRINTS Ribokinase signature 703 722 IPR002139 GO:0016301
Sebi1104g00001 1026 Pfam Protein tyrosine and serine/threonine kinase 346 445 IPR001245 GO:0004672|GO:0006468
Sebi1104g00001 1026 ProSiteProfiles Protein kinase domain profile. 344 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi1104g00001 1026 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Sebi1104g00001 1026 SUPERFAMILY Ribokinase-like 674 1016 IPR029056 -
Sebi1104g00001 1026 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 663 1025 - -
Sebi1104g00001 1026 MobiDBLite consensus disorder prediction 623 648 - -
Sebi1104g00001 1026 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 967 980 IPR002173 GO:0016301
Sebi1104g00001 1026 MobiDBLite consensus disorder prediction 101 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1104g00001 Sebi-Chr1104 14883 27996 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1104g00001 445 630 Receptor kinase-like Gene Family AT5G56890 45.263 2.32e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Sebi1104g00001 PfkB 1.2e-22 CL0118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1104g00001 - - gmx:100792309 632.869