Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1102g00003 ATGGCAGTAGTCTCTGAGTCCTCTAGCATCTCTGCCACCTCAGCAACCATTTCCCACAAAGTTGATGAAGAAGTCAGCAAAATGGAGAAGGAGAAGGACATCAAATCATCTGAACAAGATCAGGAACTTGATTTTTTCAGTCCAGAGAATAAGGGATCATCATCTTGTTGGGCTAATAGCAGCAAGGAAAATGAAGGGAGAGATGAGAGAACAGAGGAAAAGTCAAACTCAGAGTCAAGGACTTTTTCTTGCAACTTTTGTGACAGAAAATTCTCTTCTTCACAAGCTTTGGGAGGGCATCAAAATGCACACAAACAACAGCGTGCACTAGCAAAGCGTCACAAAGAGATGCAAAACAATGTTGGTGCTTTGGGGCACCCTCATCATTTTTCTTATTACCCTTATCCTAGTCTTTCCACCACACGCCCCTTTCATGGATCATATAATTGGCCACTTGGTGTTAGGATGGAATCCATGATTCACAAGCCATCCTATTCAAATTCCCCACTTGGATTCAGATATGGTGCTATGTGGCCATCAATCCTAAACCCTTCTTCTCATGATAGATTAAGGATTGAGGGTGGTGGGATTCTAGGTGCAAGTTCTACTTCAAGGAGAGAAATAATGATGGTGGGAGAACTATTGGAGCCATTCTCCAATTTGGAGAGTCCTCTGCAAATGCTGCTACAGGGTCAAACTTAG 702 0.4288 MAVVSESSSISATSATISHKVDEEVSKMEKEKDIKSSEQDQELDFFSPENKGSSSCWANSSKENEGRDERTEEKSNSESRTFSCNFCDRKFSSSQALGGHQNAHKQQRALAKRHKEMQNNVGALGHPHHFSYYPYPSLSTTRPFHGSYNWPLGVRMESMIHKPSYSNSPLGFRYGAMWPSILNPSSHDRLRIEGGGILGASSTSRREIMMVGELLEPFSNLESPLQMLLQGQT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1102g00003 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 1 79 - -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 95 114 - -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 62 77 - -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 46 61 - -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 20 45 - -
Sebi1102g00003 233 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 4 202 IPR044246 GO:0009788
Sebi1102g00003 233 Gene3D Classic Zinc Finger 59 125 - -
Sebi1102g00003 233 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Sebi1102g00003 233 MobiDBLite consensus disorder prediction 1 19 - -
Sebi1102g00003 233 SUPERFAMILY beta-beta-alpha zinc fingers 79 109 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1102g00003 Sebi-Chr1102 84586 85373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1102g00003 75 181 C2H2 Transcription Factor Family AT5G10970 47.706 1.05e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi1102g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1102g00003 - - gmx:102663393 185.267