Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi10g00093 ACTATTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGCCTTTTGGAGAGGTTTTATAACCCTAGCTCCGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGACTAAGTTGGTTGAGGCAACAAATGGGTTTAGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAGGGAGGTTCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCTCTGTTGGAGAAAGAGGCACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTCAAAGACCCCAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGACTCTAGACAGAGTCAGTGTGGATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGACATTATAGCAGTAATTAAAAATGGGGTGGTTGCTGAAAAGGGAAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATGCTTCATTGGCCGCTTTATATTCCGGTGCAGCATAA 645 0.4341 TIALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGSTEDEIIAAAQAANAHRFISSLPNGYDTSVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQETLDRVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGKHDVLIKITDGAYASLAALYSGAA 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi10g00093 214 SMART AAA_5 1 185 IPR003593 GO:0016887
Sebi10g00093 214 Pfam ABC transporter 2 139 IPR003439 GO:0005524
Sebi10g00093 214 FunFam ABC transporter B family member 1 1 211 - -
Sebi10g00093 214 Gene3D - 1 207 IPR027417 -
Sebi10g00093 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Sebi10g00093 214 ProSitePatterns ABC transporters family signature. 111 125 IPR017871 GO:0005524|GO:0016887
Sebi10g00093 214 PANTHER ABC TRANSPORTER B FAMILY 1 209 IPR039421 -
Sebi10g00093 214 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 2 208 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi10g00093 Sebi-Chr10 3176434 3177078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi10g00093 1 213 Calmodulin-binding Proteins AT2G36910 61.215 5.05e-82 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi10g00093 K05658 - gmx:100801771 335.109