Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi10g00092 ATGGCACAGAACATTGAGGTGCCACCTCCACAACCTCAAGATCATGAAAAAACCAACAACCAGAAAGTTCCTTTCTACAAGCTTTTCACTTTTGCTGATCGCCTTGACGTGGCGCTGATGATCATTGGCACCATCTGTGCCATGGCGAATGGCTTGTCGCAACCTCTCATGACCATCATTCTTGGGAAGCTCATCAACGCCTTTGGCTCCAACGTTCCATCCCAAGTTGTTAATGAAGTTTCTAAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGCATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCCTTCTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGATACCATTCTTATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCAACTCGCTCTAGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAGAACAGTTGCATCTTTTACTGGTGAGAAAAAAGCAAAAGAGAAGTATAATAACAAGTTAAAAGTTGCTTACACTACAATGGTTCAACAAGGAATGGTCTCAGGGCTAGGAATGGGAGTGCTTCTGTTGATTATCTTTTGCACCTATGGACTTGCCATGTGGTACGGTTCCAAACTGGTCATTGAAAAAGGATACATTGGTGGAACTGTCATAACTGTAATCGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAAGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTCAAAGATGTTTACTTCACATACCCTGCAAGGCCAGATGTGCAGATCTTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTCTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTGATCAGTTTATTAGAAAGATTTTATGATCCTGATGCTGGAGAAGTACTTATTGATGGGGTGAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAAATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACTAGTATCAAAGAGAACATAGCTTATGCGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGACACAAGGGCAGGGCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCTAAAATCCTCCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCTGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGAAATGCTGATACCATAACAGTGGTTCATCAGGGAAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGATGGTCACATGGCTAGATCAATAAGCAGAGGTTCATCGGGGAGTCGACACTCTCAGTCCTTTAGCTTTGCTCTTCCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGATGTTGAACAAAGTCATGTTGATAATAAGAAGCCCAAAAGGTTTTCTATAAGACGTTTGGCATACCTGAATAAGCCTGAGGTTCCTGTCTTACTACTTGGATCCATTGCTGCAGCAATAAATGGTGGTGTCGTGTTCCCTACATTTGGCCTCTTGTTTTCATCAGCCATTGTTATGTTCTTTAAACCTCCAGAACAGCAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGTTTAGGTTTAGTTACTCTAGTGGTTTTACCACTCCAAAATTACTTCTTTGGGATTGCTGGTGGAAAACTAATAGAGAGAATTCGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTTCAAATTCGAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGATGACACCTTGGCCCTCATGGTGCAAAACATATCAACAATCACAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCCTTGGTCATTATGCAAGGATGCCTTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAACATTAGAACTGTTGCATCATTTTGTGCAGAATCGAAGGTGATGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGATCTGTTCTTGTGCGACACGGCCTTGCAACTTTTTCAGAGGTTTTCAGG 2619 0.4139 MAQNIEVPPPQPQDHEKTNNQKVPFYKLFTFADRLDVALMIIGTICAMANGLSQPLMTIILGKLINAFGSNVPSQVVNEVSKVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFFGGFVIAFVRGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIRTVASFTGEKKAKEKYNNKLKVAYTTMVQQGMVSGLGMGVLLLIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVYFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYAKEGATDEEIATAITLANAKKFIDKLPQGLDTRAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNADTITVVHQGKIVEKGTHDELIKDADDGHMARSISRGSSGSRHSQSFSFALPYQSGGQTEEVDVEQSHVDNKKPKRFSIRRLAYLNKPEVPVLLLGSIAAAINGGVVFPTFGLLFSSAIVMFFKPPEQQQKDARFWTLLYVGLGLVTLVVLPLQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPSNSSGAVGARLSTDASTVKSLVDDTLALMVQNISTITTGLVIAFTANWILALIILAVSPLVIMQGCLQMRFLKGFSADAKVKYEEASQVATDAVGNIRTVASFCAESKVMDMYKKKCSGPEKQGSVLVRHGLATFSEVFR 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi10g00092 873 Gene3D ABC transporter type 1, transmembrane domain 27 71 IPR036640 GO:0005524|GO:0016020
Sebi10g00092 873 PANTHER ABC TRANSPORTER B FAMILY 13 578 IPR039421 -
Sebi10g00092 873 Gene3D - 333 603 IPR027417 -
Sebi10g00092 873 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 316 - -
Sebi10g00092 873 SMART AAA_5 370 556 IPR003593 GO:0016887
Sebi10g00092 873 Pfam ABC transporter 364 510 IPR003439 GO:0005524
Sebi10g00092 873 CDD ABC_6TM_Pgp_ABCB1_D2_like 628 873 - -
Sebi10g00092 873 MobiDBLite consensus disorder prediction 571 590 - -
Sebi10g00092 873 Gene3D ABC transporter type 1, transmembrane domain 79 857 IPR036640 GO:0005524|GO:0016020
Sebi10g00092 873 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524
Sebi10g00092 873 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 640 849 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi10g00092 873 FunFam ABC transporter B family member 1 333 581 - -
Sebi10g00092 873 SUPERFAMILY ABC transporter transmembrane region 27 327 IPR036640 GO:0005524|GO:0016020
Sebi10g00092 873 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524|GO:0016887
Sebi10g00092 873 FunFam ABC transporter B family member 9 27 338 - -
Sebi10g00092 873 Pfam ABC transporter transmembrane region 40 292 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi10g00092 873 Pfam ABC transporter transmembrane region 642 856 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi10g00092 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 569 IPR027417 -
Sebi10g00092 873 SUPERFAMILY ABC transporter transmembrane region 618 855 IPR036640 GO:0005524|GO:0016020
Sebi10g00092 873 FunFam ABC transporter B family member 1 618 872 - -
Sebi10g00092 873 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi10g00092 873 CDD ABC_MTABC3_MDL1_MDL2 343 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi10g00092 Sebi-Chr10 3172008 3175998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi10g00092 8 873 Calmodulin-binding Proteins AT2G36910 40.084 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi10g00092 K05658 - gmx:100801771 1287.71