Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi10g00057 ATGTTTCAATGCATAAGTTGTTCGAAGCAGGCAAAGGCAGAGGATGAAGAAGGTCGTGGGAGTGGCACGCCCAAGAGAAAGGAAGCCGTCAAAAGCCTGACTTCGCAGATAAAGGATCTTGTGCTCAAGATTTCAGGTGCCAAGTCCAAAGCAAACACAGGCTCAACTTCAGACAGGGGAAAGAAACCCCTTGCTGATTATGAGACCCTGTCTGAAGGGGTTCAATACCCTTATATGGGAGGTGACATGACCCCAGGAAGGACCGAACCAGTAGCAGCTGCCCAAGATGGGTTGGGGGAAGAGGATGAAGCAAGAGAGTGGGTGGCTCAGGTGGAGCCAGGAGTCCAAATCACATTCGAGACCATTCCTACTGGGGGACATGTTCTCAAGAGAATTCGCTTCAACCGAGACATGTTTGACAGGAACCAAGCTCAAGCATGGTGGGGTGACAATTATGACAGGATAATGGAACTTTACAATGTCCAGAGTTTCAACCAGAATGCTATCAGCACTTCTCAGAGGTTTGAGGATGAGCAAAGGACTCACTACTACCAAAGCTCAGCCTCAGGAATCACTTTGGACAACATTGGTGGTGGTGAAAACTTGAATGAAGGAGGGCCATCCAATGAAGCTGCAAGAACATCCAACTCTTCTATACAGGAGACTGAATTCAATAATGGCATTGACAATGACTCAGAATGGGTTGAGCAGGATCAGCCTGGAGTGTTGATCACAATCAGGGTGCTGCCTAATGGAACAAAAGAGATTCACCGTGTCAACGGCCAAATATTTGATGAGGAAGGTGCCAAGCAATGGTGGGAGGAGAACAGGGAGAGGATTAAAGAAGATTACCTTGCTTTTGAGTACATCCTTAAGTTTGGTGGGATCATGCGAGAGGAAGACTATCCTTATTCTAGTAATAATGGGGTCTTGTTGGTGGGATATGGTTCTAATGGCTATGCACCCATTCGGATGAAGGAGAAGCCATATTGGATCATTAAAAATTCCTGGGGAGAAAATGGATACTACAAGATTTGCAAGGGACGAAATATTTGTGGGGTGGATTCCATGGTTTCTACTGTGGCGGCTGTTCATACCACCACTCAGTAG 1110 0.4658 MFQCISCSKQAKAEDEEGRGSGTPKRKEAVKSLTSQIKDLVLKISGAKSKANTGSTSDRGKKPLADYETLSEGVQYPYMGGDMTPGRTEPVAAAQDGLGEEDEAREWVAQVEPGVQITFETIPTGGHVLKRIRFNRDMFDRNQAQAWWGDNYDRIMELYNVQSFNQNAISTSQRFEDEQRTHYYQSSASGITLDNIGGGENLNEGGPSNEAARTSNSSIQETEFNNGIDNDSEWVEQDQPGVLITIRVLPNGTKEIHRVNGQIFDEEGAKQWWEENRERIKEDYLAFEYILKFGGIMREEDYPYSSNNGVLLVGYGSNGYAPIRMKEKPYWIIKNSWGENGYYKICKGRNICGVDSMVSTVAAVHTTTQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi10g00057 369 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 285 IPR044532 -
Sebi10g00057 369 MobiDBLite consensus disorder prediction 199 233 - -
Sebi10g00057 369 ProSiteProfiles BRX domain profile. 105 160 IPR013591 -
Sebi10g00057 369 MobiDBLite consensus disorder prediction 10 26 - -
Sebi10g00057 369 SMART pept_c1 23 362 IPR000668 GO:0006508|GO:0008234
Sebi10g00057 369 Pfam Papain family cysteine protease 307 360 IPR000668 GO:0006508|GO:0008234
Sebi10g00057 369 SUPERFAMILY Cysteine proteinases 284 361 IPR038765 -
Sebi10g00057 369 MobiDBLite consensus disorder prediction 207 233 - -
Sebi10g00057 369 ProSiteProfiles BRX domain profile. 232 285 IPR013591 -
Sebi10g00057 369 Pfam Transcription factor BRX N-terminal domain 22 51 IPR027988 -
Sebi10g00057 369 MobiDBLite consensus disorder prediction 1 30 - -
Sebi10g00057 369 Pfam Transcription factor regulating root and shoot growth via Pin3 232 284 IPR013591 -
Sebi10g00057 369 Pfam Transcription factor regulating root and shoot growth via Pin3 105 159 IPR013591 -
Sebi10g00057 369 Gene3D Cysteine proteinases 280 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi10g00057 Sebi-Chr10 2272215 2275195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi10g00057 1 285 Major Intrinsic Protein MIP AT1G31880 43.023 5.08e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi10g00057 - - ccaj:109789470 267.7