Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi10g00048 ATGTCCTCCACAACACAAGGTGATAGGCAAGAAGAATTAGTAGTAAAGGGATCAAAGTGTGAAGATTGTGGGAACCAAGCTAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGTTGCAAAAACAAAGGCTTTCACTGCCAAACCCATATCAGAAGCACTTGGATTCCTGTGGACAAAAGGCGCCAGAGACTGGAGCAACCTCTACACCACTTTCAGGCTCAGGGTGGTGGAGATGTCCCTAAAAGGCACAAGCAGCAGAATAATCCATATTCAAGTTTAGAAGAGTTCAAATTTCCAGCAGTTGTGAATTCCATGGCAGTATTCAGCTGTGTTCGGGTGCGGTCTATGGATGAGACGGTTAATGAAATTGCTTATCAAACATCAGTCAACATTGGAGGACATGTGTTTAGTGGTCTTCTTTATGATCAAGGCCCTCAACAAGATCAACAAACCTTCAATGCTAAGGGTGAAAGCTCCTCCATAGAGCCTATAAATCATCAGCAGCATAATAATGATCTCAATCTAATTGGTGCAAGTAGTGCAATTACTATGGCTCCTCCTCTATCAACAACTCATGAGCTTCTTTTTCCTCCACCTCATCCTTTAGCTTCCTTCAGGCCCGGTATGCCATATTTTTCACTCCCAAAACCTTAA 657 0.4292 MSSTTQGDRQEELVVKGSKCEDCGNQAKKDCAYSRCRTCCKNKGFHCQTHIRSTWIPVDKRRQRLEQPLHHFQAQGGGDVPKRHKQQNNPYSSLEEFKFPAVVNSMAVFSCVRVRSMDETVNEIAYQTSVNIGGHVFSGLLYDQGPQQDQQTFNAKGESSSIEPINHQQHNNDLNLIGASSAITMAPPLSTTHELLFPPPHPLASFRPGMPYFSLPKP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi10g00048 218 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 15 181 IPR007818 GO:0003700|GO:0006355
Sebi10g00048 218 Pfam Domain of unknown function (DUF702) 17 147 - -
Sebi10g00048 218 NCBIfam LRP1 C-terminal domain 98 146 IPR006511 -
Sebi10g00048 218 NCBIfam putative zinc finger domain, LRP1 type 19 61 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi10g00048 Sebi-Chr10 1988451 1989393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi10g00048 17 217 C2H2 Transcription Factor Family AT1G75520 38.525 8.41e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Sebi10g00048 DUF702 2.3e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi10g00048 - - gmx:100790751 264.618