Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi109g00092 ATGACTCCAGTTAATTTGGCAGGGCAGTTTGGTGACACCACATACACCAAGGTGTTTGTTGGAGGATTGGCTTGGGAGACACAAAAAGAGACCATGAAGAAGTATTTTGAGCAATTTGGTGAAATCTTAGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTTACTTTCCGCGAACCAGAAGCTGCTATGAGAGCTTGTGTGGATGCTGCTCCTGTGATCGATGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCATTCAACACCAAAGCATGATGGAGACCTTGCTGACAACCTCATCTTCCGCACACTTGAAGCAACAGGGCCCACCAAATGCACAATTGATGTTGGTTCAATGCTTGGAAGAACCCAGGTCCAGTACCCATACGTAACCGGATCCTCTGTAGTCGCTGTCAAATACAAAGATGGGATTCTAATGGCTGCTGATATGGGAGGTTCATATGGATCTACCTTGCGGTACAAGAGCGTTGAGCGTTTGAAGCCTGTTGGGAAACATTCTCTTCTTGGTGCTAGCGGGGAAATAAGTGACTTTCAGGAGATTCTACGCTACCTTGATGAGCTTATCCTTTATGACAACATGTGGGATGATGGGAATTCTCTGGGGCCCAAGGAGGTGCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAACCCACTGTGGAACTCACTTATACTTGGTGGTGTGAAAAATGGGCAGAAGTACCTTGGCATGGTTAACATGATTGGCATTAATTTTGAAGACAACCATGTAGCAACTGGTCTTGGAAATCATCTTGCTAGGCCGATTCTCCGTGATGAGTGGCATGAAAACTTGACCTTCGAAGAAGGCGTCAGGTTACTGGAAAAATGCATGCGTGTGCTTTTGTATCGTGATAGGTCTGCTGTCAACAAGATTCAGATATCTAAAATTACTGAAGAAGGTGCTACTGTTTTCCAACCATTTTCGTTGAAAACATACTGGGAATTCTCTGCATTCAAGAATCCAACAGTGGGTGCTGAAGTTTACACGAAATATGACCAACTGACAGAACCAAACAACCAGAGAAACAGAAAAGCGAGAGACATCATCACACAGTTAGGTCAGTCTAACAAGCTGGGTCCAATTATAATTATTAGATTACAGATTACATCCAAATTGAAGATGGTGAAAGCTGAAAAGAAAGAAGTAGGAAGATGCAGGAGAGGAGAGAAGGCAATACCTGGCAAATTGAAGATGCCAGTAGAAATACTGGCAAATCTTCTCGAGAATGGTGGTGCTGATCTCAGGAAAAGTTCGAGAGATCGGAGAGGAGAAGGAGCTATGGCGCATAGGGTGGACCACGAGTATGATTATCTGTTCAAGATCGTTTTGATCGGGGACTCTGGTGTGGGCAAATCCAACATCCTCTCCAGGTTTACACGAAACGAGTTCTGCTTGGAGTCCAAATCTACTATTGGAGTTGAATTCGCCACCAGGACCCTTCAGGTAGAGGGAAAGACGGTTAAGGCACAGATCTGGGATACAGCAGGTCAGGAGCGGTACCGTGCCATTACAAGTGCTTATTATAGAGGAGCTGTTGGTGCTCTCCTTGTATATGACATAACTAAGAGGCAAACCTTTGACAATGTCCAGAGGTGGCTGCGTGAATTGAGGGACCATGCGGATTCTAATATAGTTATCATGATGGCTGGAAATAAATCTGATTTGAACCATCTTAGAGCTGTTTCAGAGGATGATGGTCAAGCATTGGCAGAGAGGGAAGGTCTCTCGTTTCTTGAGACATCTGCACTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATATTGACAGAGATTTATCAAATTGTAAGCAAAAAAGCACTTGCAGCTCAGGAAGCAGCTTCTGGCACCTCACTTCCTGGTCAAGGAACCACCATCAATGTTGCTGATGCGTCTGGGAACACAAAGAGAGGCTGCTGTTCCACTTAG 2025 0.4479 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKHSTPKHDGDLADNLIFRTLEATGPTKCTIDVGSMLGRTQVQYPYVTGSSVVAVKYKDGILMAADMGGSYGSTLRYKSVERLKPVGKHSLLGASGEISDFQEILRYLDELILYDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLILGGVKNGQKYLGMVNMIGINFEDNHVATGLGNHLARPILRDEWHENLTFEEGVRLLEKCMRVLLYRDRSAVNKIQISKITEEGATVFQPFSLKTYWEFSAFKNPTVGAEVYTKYDQLTEPNNQRNRKARDIITQLGQSNKLGPIIIIRLQITSKLKMVKAEKKEVGRCRRGEKAIPGKLKMPVEILANLLENGGADLRKSSRDRRGEGAMAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYQIVSKKALAAQEAASGTSLPGQGTTINVADASGNTKRGCCST 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi109g00092 674 ProSiteProfiles small GTPase Ras family profile. 466 674 IPR001806 GO:0003924|GO:0005525
Sebi109g00092 674 FunFam Proteasome subunit beta type-7 139 357 - -
Sebi109g00092 674 PRINTS Transforming protein P21 ras signature 609 631 - -
Sebi109g00092 674 PRINTS Transforming protein P21 ras signature 494 510 - -
Sebi109g00092 674 PRINTS Transforming protein P21 ras signature 574 587 - -
Sebi109g00092 674 PRINTS Transforming protein P21 ras signature 512 534 - -
Sebi109g00092 674 PRINTS Transforming protein P21 ras signature 471 492 - -
Sebi109g00092 674 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Sebi109g00092 674 PANTHER DRAB11-RELATED 464 660 - -
Sebi109g00092 674 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 143 358 IPR029055 -
Sebi109g00092 674 SMART rrm1_1 17 89 IPR000504 GO:0003723
Sebi109g00092 674 ProSitePatterns Proteasome beta-type subunits signature. 150 197 IPR016050 GO:0005839|GO:0051603
Sebi109g00092 674 SMART rab_sub_5 471 634 - -
Sebi109g00092 674 SMART rho_sub_3 473 633 IPR001806 GO:0003924|GO:0005525
Sebi109g00092 674 ProSiteProfiles small GTPase Rab1 family profile. 466 672 - -
Sebi109g00092 674 Pfam Ras family 472 632 IPR001806 GO:0003924|GO:0005525
Sebi109g00092 674 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Sebi109g00092 674 SMART ran_sub_2 476 674 - -
Sebi109g00092 674 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Sebi109g00092 674 NCBIfam small GTP-binding protein domain 469 627 IPR005225 GO:0005525
Sebi109g00092 674 Gene3D - 7 108 IPR012677 -
Sebi109g00092 674 CDD proteasome_beta_type_4 145 338 IPR016295 -
Sebi109g00092 674 Gene3D - 463 672 IPR027417 -
Sebi109g00092 674 Pfam Proteasome subunit 145 327 IPR001353 GO:0005839|GO:0051603
Sebi109g00092 674 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 140 348 IPR029055 -
Sebi109g00092 674 SMART ras_sub_4 468 634 - -
Sebi109g00092 674 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Sebi109g00092 674 CDD RRM_RBM24_RBM38_like 16 91 - -
Sebi109g00092 674 FunFam ras-related protein RABA1f 463 672 - -
Sebi109g00092 674 ProSiteProfiles Proteasome beta-type subunit profile. 146 328 IPR023333 -
Sebi109g00092 674 SMART arf_sub_2 459 636 - -
Sebi109g00092 674 ProSiteProfiles small GTPase Rho family profile. 464 646 - -
Sebi109g00092 674 CDD Rab11_like 468 632 - -
Sebi109g00092 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi109g00092 Sebi-Chr109 1851385 1870500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi109g00092 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 1.11e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi109g00092 K02736 - gmx:100527174 439.499