Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi109g00053 ATGGGAGTTCGGTGCTCTAAATTCTCTATGTGCTGGTGGCCTTCCAATATCAAATCAAACCTCCATGACATGTCTGATAATGATGATGGGAACAAGAATGAGAAGGATCATTGGGTTGGTTTCACTGAGTACACCTTGGATCAACTAAAATTTGCCACTTCAGGATTTTCACCAGACAACATTGTCTCAGAACATGGTGAGAAGGCTCCTAATGTTGTTTACAGAGGAAGGCTTGAAGATGATAGGTTGGTTGCCGTGAAGCGCTTCAACAAATCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAAGCACGAGCAGTGGGGCAGCTGCGGAATGAACGATTAGCTAACTTGGTTGGGTGTTGCTGCGAAGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCGAAACATCTTTTTCACTGGGAGACTCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCCTTATATTTGGCACAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGAGATGGCAGAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGAATCACCCCTGAAAGTGTAGTTTACAGTTTTGGAACCTTATTGCTTGATCTTCTGAGTGGAAAGCATATCCCACCCAGTCATGCACTTGACCTTATACGAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCATCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGCCAAGTCACTTGTCACTGCTCTAACCCCTCTTCAGAAAGAAACTTCAGTACCGTCAAATGTTTTAATGGGCATACCCGATGGGAGTCTATCATCAAAGGAAACAGTTTCATTAACGCCTTTTGGAGAAGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATTTTGGAAAAGGTGGGCTACAAGGATGATGAAGATGTTGCGAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGACACACTAAATTCTAAGAAGCATGGCGATTCTGCTTTTCATGCTAAAGACTTCTCTACGGCCATTGACTGCTATACACAATTCATCGATAGTGGGACCATGGTATCACCAACAGTGTACGCCAGGCGCTGCTTATGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCCATATCTCCAACCTGGCCTACTGCATTCTATCTTCAAGCAGTTGCCCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGCACAACACTGGAAACCAGAAGGCATAGAAATTGA 1476 0.4336 MGVRCSKFSMCWWPSNIKSNLHDMSDNDDGNKNEKDHWVGFTEYTLDQLKFATSGFSPDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKETSVPSNVLMGIPDGSLSSKETVSLTPFGEACSRRDLTAIHEILEKVGYKDDEDVANELSFQMWTNQIQDTLNSKKHGDSAFHAKDFSTAIDCYTQFIDSGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAFYLQAVALFSLGMDNDAQESLKDGTTLETRRHRN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi109g00053 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Sebi109g00053 491 SUPERFAMILY Protein kinase-like (PK-like) 35 316 IPR011009 -
Sebi109g00053 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 490 IPR045845 GO:0004672|GO:0009742
Sebi109g00053 491 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi109g00053 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Sebi109g00053 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Sebi109g00053 491 SUPERFAMILY TPR-like 389 481 IPR011990 GO:0005515
Sebi109g00053 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Sebi109g00053 491 Gene3D Tetratricopeptide repeat domain 385 490 IPR011990 GO:0005515
Sebi109g00053 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Sebi109g00053 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi109g00053 Sebi-Chr109 1064412 1068148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi109g00053 14 333 Glycoside Hydrolase AT3G07070 32.471 1.90e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi109g00053 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi109g00053 - - gmx:732542 927.932