Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi109g00011 ATGTCGACAACAACCCCATTCGGCGGCGACTCTTCCTCTGACCACCTTGACACGCCGACGCTTGACAGGGAGTCCCCTATGCTACTCCACTCCATCTCGGAGCACGGGGGATACGCCTACGTCAGCATGGCGGCGCTGGCGGCGACCGGCGACATTCGCGCGGCGGAGGCAGCTCGGGAGATGGCGTGGGAGCAGCTGCACTCGGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGTGACGCGTACTCCATGGCATGCCTCCACGTGGCGAGGCACCACTACGGCCACGGCGAGTTCAAGGAGGCGCTTAGGGTTTTGGATATGGGGATCATAATGGGAGGGACGCTCTTGAGAAACGATTTGGACTCTGCCATTGAGAAAATTTCGGAAAAAGCAAGGAGCGTTAGGGTGCTCCAACTTTTACCTGTTAAGTCCCTTTCTTCTAAGCTTGTGGTGAAGAGGTCCGAGCTGTCATTGGAAATGTTTCTGAAAGATCATTACCTGTCTGGCTCCCCAGTTATCATCAGTGATTGTATGGCTCACTGGCCAGCTAAGTCAAAATGGAATAACATAGATTACTTGCTAAGAGTTGCTGGTGATCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATTTATGTGCAGATTGGAAGCAAGAGCTAATTACATTTTCAGAGTTTCTTGAGCGGATAAAGTCCAGTGGCCATTCTCCTGGTTGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTGACACCACTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGGAAAAAATACATCAGGCTTTATTCAGCATCATTGTCTGAGGAACTTTTCCCCTACTCAGATACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATATATCCCTCCGAAATGGTGGCACTATGTGCGCTCATTAACTACCAGTTTATCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCAGATGCATCCTAA 1179 0.4877 MSTTTPFGGDSSSDHLDTPTLDRESPMLLHSISEHGGYAYVSMAALAATGDIRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGHGEFKEALRVLDMGIIMGGTLLRNDLDSAIEKISEKARSVRVLQLLPVKSLSSKLVVKRSELSLEMFLKDHYLSGSPVIISDCMAHWPAKSKWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELITFSEFLERIKSSGHSPGCPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASLSEELFPYSDTMLSNSSQVDLDDVDERKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSDAS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi109g00011 392 SMART cupin_9 241 391 IPR003347 -
Sebi109g00011 392 MobiDBLite consensus disorder prediction 1 15 - -
Sebi109g00011 392 Gene3D Cupin 150 384 - -
Sebi109g00011 392 MobiDBLite consensus disorder prediction 1 20 - -
Sebi109g00011 392 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 387 - -
Sebi109g00011 392 Pfam Cupin-like domain 160 385 IPR041667 -
Sebi109g00011 392 SUPERFAMILY Clavaminate synthase-like 155 384 - -
Sebi109g00011 392 FunFam lysine-specific demethylase JMJ30 150 383 - -
Sebi109g00011 392 ProSiteProfiles JmjC domain profile. 250 392 IPR003347 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi109g00011 133 383 Acyl Lipid Metabolism Gene Families AT3G45880 25.253 4.68e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi109g00011 Cupin_8 1.9e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi109g00011 K24444 - gmx:100813075 668.307