Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi109g00002 ATGCCTGCTGTTCATGGTCCATTTGATTCAATTAAAGATATAAAAGAGGGTAGGCAGGCTTTGAGGCTTAAAGTTAGGGTTGTTAGGGTCTGGGAGGTATGCCAAAGAGACAATCCTTCCAATGTATTCTCTCTTGAGATGGTTTTGGTGGATGCTGATGGTGATAGGATTCAAGCAAGCATAAGGAAAGCCATGATTAGGAAATTTAGGAACTCTATTGTTGAGGGTGTTGTCTATAGGATGATTTACTTCTCAATCCTTGAAAACAATCCAAGGACAACAATTATGCCTACTGAAAGTGAGTTCATACCAAGATTTGGAATCCAAGCTAAGACCTCTGAGGAGCTTCGGGAAACTAATGGAAAGTCAGATTATATGTTTGATTTCATTGGTCTTTTAACTGCTGTGGGTGAGGAGAAGGAGTTCACAAAATTTGGGAGGCCAATTAGAGTACTTGAAATAGAGTTGAAAGATGACAAGGGTGTGATGAGGTGTTCATTATTTGGACACTTCATTGAAATCATGAAAGATTTTATTGCTAATGGTGTGGAAGACCTTGGCATATTAGTCATCCAGTTTGCAAAAGTGAAGGAATACATGGGTCAGGTTTCCCTTAACACTGTTGGTAACTCCACAAGGTTGCTTTGGAATGCTCAGATTCCAGAGGTTACCTCCTTTAAGAACAGTATTATGCATAATGGTCTGGAAATGCATGCTCCCCTCAAGATGATTGGGTATAACAATTATTCACCAACTGAAGAGTTTCTGCTCCATTTTCCTCGAAAGTGCATAGAGGATCTCCATATGACTGAAGAGGAGGGAAACTTTATCTGTCTTGGGAAAGTTGAGGGAATTGTGAAAGATGACTACTGGTGGTATATGGCATGTAAATGCCATAAGTCAGTCAACCTAAATGATTCTGGGAGTTATTACTGTACTGGATGTGTGGGATTTGTTGAAGATGTTACTCCTAGATATAGGCTGAAGTTGGAGGTTAAAGACCACAGTGACAGTGCTCATTTTGTCCTATTTGATTTTGATGTTGCATGTTTGTTATCAAAGACATGTGCCTCGATTGTTTGGGATGCCAAGGTTCCTACCCTTGATTATCCCCTGGACTTGGACATGGTCATTGGCAAGGAGCTTCTCTTCAAAGTTGAAGTGAAAGCTGACCGTGCCTATAAGTTTGATGATTCATTTAAGGTTAGGAGGACATGTGATGATGAGGATATTATTAGGGAGTTAAAAAATGAAGGATCAATCATGACTCCTGAGAAGTCCAAAATGAAATCACCTATAAATGAGATGTGTAATGAGGATGATGTCCAGTCTGGAGATGGACCAAAAGCATCTCAATCAGTCCCTGTCATTGAACTATTTAATGAGGCTGAAATGAGTCCCCTCACTGTTGAAGAGTGTTCCAGTGCTGCTGCATGTTTGGCACCTCTGAAACGTAAGACTGGGCGTGGTGCTGTGCCAAGGAAAGGACTGCATGGGAAGGTGCTGAAGATTGAGAAGGATTAG 1524 0.4088 MPAVHGPFDSIKDIKEGRQALRLKVRVVRVWEVCQRDNPSNVFSLEMVLVDADGDRIQASIRKAMIRKFRNSIVEGVVYRMIYFSILENNPRTTIMPTESEFIPRFGIQAKTSEELRETNGKSDYMFDFIGLLTAVGEEKEFTKFGRPIRVLEIELKDDKGVMRCSLFGHFIEIMKDFIANGVEDLGILVIQFAKVKEYMGQVSLNTVGNSTRLLWNAQIPEVTSFKNSIMHNGLEMHAPLKMIGYNNYSPTEEFLLHFPRKCIEDLHMTEEEGNFICLGKVEGIVKDDYWWYMACKCHKSVNLNDSGSYYCTGCVGFVEDVTPRYRLKLEVKDHSDSAHFVLFDFDVACLLSKTCASIVWDAKVPTLDYPLDLDMVIGKELLFKVEVKADRAYKFDDSFKVRRTCDDEDIIRELKNEGSIMTPEKSKMKSPINEMCNEDDVQSGDGPKASQSVPVIELFNEAEMSPLTVEECSSAAACLAPLKRKTGRGAVPRKGLHGKVLKIEKD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi109g00002 507 SUPERFAMILY Nucleic acid-binding proteins 7 94 IPR012340 -
Sebi109g00002 507 CDD RPA1_DBD_C 265 416 IPR047192 -
Sebi109g00002 507 Gene3D - 7 105 IPR012340 -
Sebi109g00002 507 CDD RPA1_DBD_A_like 22 106 - -
Sebi109g00002 507 Gene3D - 257 416 IPR012340 -
Sebi109g00002 507 CDD RPA1_DBD_B_like 128 227 - -
Sebi109g00002 507 Gene3D - 106 239 IPR012340 -
Sebi109g00002 507 PANTHER OS03G0429900 PROTEIN 194 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi109g00002 507 Pfam Replication factor-A C terminal domain 285 406 IPR013955 -
Sebi109g00002 507 SUPERFAMILY Nucleic acid-binding proteins 260 406 IPR012340 -
Sebi109g00002 507 SUPERFAMILY Nucleic acid-binding proteins 119 235 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi109g00002 Sebi-Chr109 23306 25713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi109g00002 23 337 Core DNA Replication Machinery Family AT4G19130 23.209 6.32e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi109g00002 - - lja:Lj6g3v0884310.1 365.54