Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1098g00001 ATGCAAGTGGCAGCAGAAGTCCAACAGCACCATCACCAAAGGCACCAAGACACCCAGATGTGTAGGAAGATCCAACTCAGTATCACTGATCACACCACCGTTGATGATGGTGGCTGTGACAAGATGGACGGTGAGGATCTCTTCATCCCACCCCTCAATTTTGCCATGGTTGATAACGGCATTTTCCGCTCTGGTTTCCCTGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCTGAGCCATATCCGGAGGCTAACATAGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAGTTTGGGATTGAGGGTCATAAG 345 0.4928 MQVAAEVQQHHHQRHQDTQMCRKIQLSITDHTTVDDGGCDKMDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANIEFLKSNGIKLYQFGIEGHK 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1098g00001 115 Gene3D Protein tyrosine phosphatase superfamily 47 115 IPR029021 -
Sebi1098g00001 115 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 114 IPR029021 -
Sebi1098g00001 115 PANTHER TYROSINE-PROTEIN PHOSPHATASE 21 110 - -
Sebi1098g00001 115 Pfam Tyrosine phosphatase family 49 114 IPR004861 -
Sebi1098g00001 115 PRINTS Plant and fungal dual specificity phosphatase signature 104 115 IPR020428 GO:0016791
Sebi1098g00001 115 PRINTS Plant and fungal dual specificity phosphatase signature 85 98 IPR020428 GO:0016791
Sebi1098g00001 115 PRINTS Plant and fungal dual specificity phosphatase signature 48 65 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1098g00001 Sebi-Chr1098 325 827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1098g00001 42 115 Protein tyrosine phosphatase (PTP) family AT1G05000 81.333 2.97e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1098g00001 K18045 - gmx:100814279 189.889