Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi1094g00007 ATGGACAAACATGCCATGGTTGGTGGTGCTGGTGCTACAACTGATCACACTCTATCATCTTGTGGAGTTAATAATGATAACAACAAGTTGTACAAAGGTGTGAGAAAGAGAAAGTGGGGTAAATGGGTTTCTGAAATAAGGCTTCCGAATAGCCGTGAACGCATATGGCTGGGGTCTTATGACTCACCTAAGAAGGCTGCTAGGGCCTTTGATGCTGCCCTTTACTGTCTACGTGGTCGCCATGCCAGTTTCAATTTCCCTGATACACCTTTCAATTTGGACATCAATGTAGCTGCAGCTGGTGATCAATCCCTTACCCCACAGCAGATTCAAGAGGTTGCTGCTAGGTTTGCCAACGAAGAGGACCCACAAATGTTGCAACTTGTTGATCCTCAACGTGGTGGTGGTGCAGTAGGATCGAAGTCCCACATCGAAAAAAGTGAGAGTTATACGACCGCGTCGTCATCGTCTACTCCTAGTACTAGTATAATGGAGCATGGGGACATGAACACTACAATTGATTGGACATTTTTGAATGTGTTGGATGACTCAAGTGAGGTTCTTGTTGGATCTGATTATGGCCTCTATTCTGAGATAGATATTGACAAGATCCACTCGGGTGAGTTATTGTATTCCACTACTCCACCCCCATTTCAGGAAGAAGAAGAAGAAATTGAATTAGGCGATGATGATCCTTTTTCTCATCAATCATTCCTTTGGAATTGGAACTTTTGA 735 0.4381 MDKHAMVGGAGATTDHTLSSCGVNNDNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPKKAARAFDAALYCLRGRHASFNFPDTPFNLDINVAAAGDQSLTPQQIQEVAARFANEEDPQMLQLVDPQRGGGAVGSKSHIEKSESYTTASSSSTPSTSIMEHGDMNTTIDWTFLNVLDDSSEVLVGSDYGLYSEIDIDKIHSGELLYSTTPPPFQEEEEEIELGDDDPFSHQSFLWNWNF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi1094g00007 244 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Sebi1094g00007 244 MobiDBLite consensus disorder prediction 144 166 - -
Sebi1094g00007 244 MobiDBLite consensus disorder prediction 131 166 - -
Sebi1094g00007 244 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 175 - -
Sebi1094g00007 244 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Sebi1094g00007 244 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Sebi1094g00007 244 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi1094g00007 Sebi-Chr1094 96150 96884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi1094g00007 31 242 AP2-EREBP Transcription Factor Family AT1G19210 40.845 5.29e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi1094g00007 AP2 1.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi1094g00007 - - gmx:100817386 257.684